UFO04902.5prime Sequence
927 bp (927 high quality bases) assembled on 2009-06-30
> UFO04902.5prime
CAGTCGACATGCGCGTGAGCACCATCCGCAGCGGTCGGATCTGCCGGCTG
GCATTGTGCCTGCTGGTACTGCTGCCGCTGCTGTATCTGCTGGCCAACTG
GAGCGATCACCACAAGCGCGTCCAGGAGGCGTATCACACGCGCTTCGGCG
GACCCAAGTTCGCCCACCAGCGATTGGAGGGCAGGCCCAGGGAGGTGCCC
AAGCTGGTCGATGGCCTTGGCAACTTTGAGCCGAAAGATGTGAAGCCACG
TAGCGGGCCTGGCGAGAATGGCGAGGCCCACAGCCTGTCGCCGGACAAGA
AGCACATGTCGGACGCCTCCGAGATGGAGTACGGCATGAACATCGCCTGC
TCCGATGAGATATCGATGCACCGATCGGTGCGGGACACGCGGCTCGAAGA
GTGCCGCCACTGGGACTACCCCTTCGATCTGCCGCGCACGAGCGTCATCA
TTGTCTTCCACAACGAGGGCTTCTCGGTGCTGATGCGCACCGTGCACTCG
GTCATCGATCGTTCGCCCACGCACATGCTGCACGAGATCATCCTGGTGGA
TGACTTCTCCGACAAGGAGAACCTGCGCAGCCAGCTGGACGAGTATGTGC
TGCAGTTCAAGGGGCTGGTCAAGGTCATCAGGAACAAGGAGCGCGAAGGT
CTCATCCGAACGAGATCCAGGGGAGCCATGGAGGCTACAGGTGAGGTGAT
CGTCTTCTTGGACGCCCATTGCGAGGTAAACACCAACTGGCTGCCGCCCT
TGCTGGCGCCCATCTACCGGGATCGCACTGTGATGACAGTGCCCATTATC
GATGGCATTGACCACAGAACTTTGAGTACCGGCCCGTTTATGGCACGGAC
ACCACTTCCGCGGCATCTTCGAATGGGGCATGCTGTACAAGGAGAACGAG
TGCCACGTCGCGAAGCAGCGCCCCGTG
UFO04902.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 3668 | CG6394-RC | 551..1472 | 9..927 | 4475 | 99.3 | Plus |
| GalNAc-T2-RB | 3437 | CG6394-RB | 437..1358 | 9..927 | 4475 | 99.3 | Plus |
| GalNAc-T2-RA | 2537 | CG6394-RA | 437..1358 | 9..927 | 4475 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18497942..18498422 | 693..213 | 2405 | 100 | Minus |
| X | 23542271 | X | 18499231..18499436 | 214..9 | 1030 | 100 | Minus |
| X | 23542271 | X | 18497277..18497505 | 913..688 | 980 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:02 has no hits.
UFO04902.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:41 Download gff for
UFO04902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RB | 431..1355 | 6..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:07 Download gff for
UFO04902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 434..1358 | 6..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:28 Download gff for
UFO04902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 434..1358 | 6..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:28 Download gff for
UFO04902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18497263..18497502 | 691..927 | 97 | <- | Minus |
| X | 18497945..18498421 | 214..690 | 100 | <- | Minus |
| X | 18499232..18499439 | 6..213 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:07 Download gff for
UFO04902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18391296..18391535 | 691..927 | 97 | <- | Minus |
| arm_X | 18391978..18392454 | 214..690 | 100 | <- | Minus |
| arm_X | 18393265..18393472 | 6..213 | 99 | | Minus |
