UFO04903.5prime Sequence
1141 bp (1038 high quality bases) assembled on 2009-06-30
> UFO04903.5prime
CAGTCGACATGTTAATTAACCGGAGCAAAACAAGAGTGAGCCCAACGTCT
GAGCGAATCCTCGAGAAAACCGAAGCCGAGATGAAGTTCCGTGGCAATGG
AAAGCTTTTGTGGAATTTGACCAAGAACTCCTTGGCCCAGCAGTCTCCAA
ATGGGATCGCCAAGAAAGTGCTGCCCGCTAGCAGCTACAGCACCGTCCAG
AAGACCATTCCCTTGGAGCAGCCGAATCTGCTGAAGTACCACGTCCTGCC
GCTGGAGGAAACGCTGAACCGCTTCATGACCACTGTGGAACCTCTCCTGA
CGCCTGAGGAGTTTCAACGGCAAAAGGGAATCACCTCCGAGTTTTTAAAA
AAGCAGGGACGCGAACTGCAGCTGCTCCTGGAAGAAACCGGCAGCAAGGA
GAAGAATTGGCTGGCCCACCGCTGGCTGAAGGCTGCCTATTTGACCTATC
GAGATCCAGTCACCGTGTTCGTGAGTCCTGGCATGACCTTTCCCAAGCAA
AACTTCAGGGACTCACGTGCTTTCGTGGACTATACCGCCAGGGTTATCTA
TGGACTGGGAGAATTCAACGACATGGTGCACGCCAACAAAATTCCGATCG
TTAAAATGGGCAAGAACGAGCTGGACAACAGCCAGTTTGGCAAGGTATTC
GGCACATGTCGGATTCCCAGAAGGGGCACCGACGAGATCGTGTACAATCC
CGACTCCGATTATGTGGTGGTGATCTACAAGAATCACTTCTACCAACTGA
AGATATACAGTAAGGAGGGAAAGCTCATTGCTGCACCATGTCTAGCTGCT
CAACTCGAGAATATCGTCTTGAAGGAAACGCAAGTGGGAGTTCCTTATGG
TATTCTGACCACCGACTCCAGGGACAATTGGGCGGAGCCTACGATATCTG
GTTGAGACTCCTGCAACCGGGATGCCCTCAGACCATTCAGGTGCTCTGTC
ACGTCTCACTCGATGAGGTACTATCCTAAAGGAGCGAGAGACGACGACTT
ATCCTATTCGCTGATCATGCATGCAGCAGATAAACAGCGCACGTTGATGG
ACAGACTATTTCAGCTGGGGTAACCCCATGAAACGTCGATCACTTAGGAA
CACTCGCCCGGCTGGGCAAGCAATGCCAGTTAGTGATGACA
UFO04903.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1041-RD | 2267 | CG1041-RD | 68..1199 | 9..1114 | 4865 | 97 | Plus |
| CG1041-RA | 2380 | CG1041-RA | 181..1312 | 9..1114 | 4865 | 97 | Plus |
| CG1041-RB | 2283 | CG1041-RB | 114..1215 | 39..1114 | 4715 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6372365..6373237 | 983..119 | 3970 | 98.9 | Minus |
| 3R | 32079331 | 3R | 17139397..17139910 | 374..887 | 815 | 77.2 | Plus |
| 3R | 32079331 | 3R | 6373302..6373382 | 119..39 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:28 has no hits.
UFO04903.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:42 Download gff for
UFO04903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 181..1254 | 9..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:02 Download gff for
UFO04903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 181..1254 | 9..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:50 Download gff for
UFO04903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 181..1254 | 9..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:50 Download gff for
UFO04903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6373302..6373380 | 41..119 | 100 | <- | Minus |
| 3R | 6373814..6373845 | 9..40 | 100 | | Minus |
| 3R | 6372365..6373236 | 120..983 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:02 Download gff for
UFO04903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2198087..2198958 | 120..983 | 99 | <- | Minus |
| arm_3R | 2199024..2199102 | 41..119 | 100 | <- | Minus |
| arm_3R | 2199536..2199567 | 9..40 | 100 | | Minus |
