UFO04904.5prime Sequence
1131 bp (1034 high quality bases) assembled on 2009-06-30
> UFO04904.5prime
CAGTCGACATGTATCTGTACAACCTGACCCTGCAGAAGGCCACCGGCGTG
ACCCACGCGGTCCACGGCAACTTCTCCGGCGGCAAGCAGCAGGAGGTCCT
CCTGTCGCGTGGCAAGTCGCTGGAGCTACTGCGTCCGGACTCCAACACCG
GCAAGGTGCACACCCTGCTCTCCACGGAGATATTCGGATGCGTTCGCGCC
CTGATGGCCTTTCGACTGACGGGCGGCACTAAAGATTACATAGTTGTGGG
CTCGGACTCGGGACGCATCGTGATCCTCGAGTACAATCCCTCCAAGAATG
CTCTTGAAAAAGTGCACCAGGAGACGTTCGGAAAGTCGGGATGTCGCAGG
ATTGTGCCTGGGCAATACTTTGCCATCGATCCTAAAGGAAGAGCCGTGAT
GATTGGCGCCGTGGAGAAGCAAAAGCTGGCCTACATCATGAACCGGGACA
CGCAGGCTCGCCTCACGATCTCATCGCCCCTGGAGGCCCACAAATCGAAT
ACACTGACATACCACATGGTCGGCGTGGATGTGGGCTTCGATAATCCCAT
GTTCGCCTGCCTAGAGATCGACTACGAAGAGGCCGACATGGATCCATCGG
GTGACGCCGCCCAGCGCACTCAGCAAACGCTGACTTTCTACGAGTTGGAT
CTCGGCTTAAACCACGTGGTTCGCAAATACTCGGAGCCCTTGGAAGAGCA
CGCCAATTTCTTGGTATCCGTGCCTGGGGGCAACGATGGTCCTTCGGGCG
TGCTGATCTGCTCGGAGAACTACCTAACGTACAAGAATCTCGGCGATCAG
CACGATATCCGCTGTCCCATTCCGCGCAGAGAAACGATCTGGATGATCCC
GAACGTGGTATGATCTTCATCTGCTCGGCCACACATCGCACCAAGAGCAT
GTACTTCTTCTGCTGCAGACCGAGCAGGGAGACATCTTTAGATCACCCTG
AAACGGACGATGATGTGGTCTCCGAGATCAGCTAAGTACTTCGATACAGT
GCCGCGGCACTGCCATGGTGCGTGCTAAGACGGTTCCTGTCGTGGCAGCG
AGTTTGGCCACCACTTATTCTATATCAATCGCTCATCTGGTGACGACAAT
GACAGACTGAGTCAGGTCGGCCAATGCCTGG
UFO04904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13900-RC | 4329 | CG13900-RC | 161..1295 | 8..1129 | 5105 | 97.7 | Plus |
| CG13900-RA | 4222 | CG13900-RA | 161..1295 | 8..1129 | 5105 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 832040..832409 | 602..233 | 1850 | 100 | Minus |
| 3L | 28110227 | 3L | 831380..831791 | 1005..600 | 1760 | 98.5 | Minus |
| 3L | 28110227 | 3L | 832715..832941 | 234..8 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:32:09 has no hits.
UFO04904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:43 Download gff for
UFO04904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 172..1295 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:32 Download gff for
UFO04904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 172..1295 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:13 Download gff for
UFO04904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 155..1278 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:13 Download gff for
UFO04904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 831316..831790 | 601..1063 | 96 | <- | Minus |
| 3L | 832042..832407 | 235..600 | 100 | <- | Minus |
| 3L | 832715..832944 | 1..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:32 Download gff for
UFO04904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 831316..831790 | 601..1063 | 96 | <- | Minus |
| arm_3L | 832042..832407 | 235..600 | 100 | <- | Minus |
| arm_3L | 832715..832944 | 1..234 | 98 | | Minus |
