UFO04906.5prime Sequence
1051 bp (863 high quality bases) assembled on 2009-06-30
> UFO04906.5prime
CAGTCGACATGGGGCAACTAACTTTCGAAGATGATTGCCTGATCCGCGAA
CTGGATAGTCGATACTACGGCTTTTTGGATTTGTCCAATTCGAAAAATGC
GGAATTAAGGAATCTCGTTCAGCAGACCATCACAAACTTACAAAACTACA
TTGCAAATGGTCAGGTTCACGAATCAAAGAACAGCAGTGATAATAAAAAT
GCTATACAAAAGTTTGAGCCATCAACTCAAGCAGGTGAACATATGGAAAA
CACATCTTCCCGAAACAATGACGACACCAAACCTTTCGAGCAAGATGCCA
AGGAAAAGGTGTCCATCATTGAAGAAAAACACCAGGATGAACACTACGTT
AACGCTCTTTGCAAACTTGGCCACCTGCATCTTCTTCTTGGCGAATACTC
CGAAGCTTTATCAGCGTACCAAAAGTATTTAAGATTCCGAGAAAACAATT
ACTGGACAAATCATGCATTTATCTATGGAATAGGCGTTGCTTATTTTAAA
CTTCGGTGCTTTAAATGGGCCATCAAATCGTTTCAGGAGCTTTTATACCT
AAGTCCCAATTTTACATGTGCAAATGAAGTTCATTTGCGTCTAGGTCTTA
TGCTAAAACACTGCGGGGAGTTCCATATTGCCCTAAAACATTTACAATTG
GCGCTGCTTTATACATATCCTTCGACCTTTTCGGAACTTCAGGTCAAATT
TCAAATCGCGCATTTGTACGAAGTTCAAAACAAGCACAAGGCGGCAAAGG
ATGGCTACGATTTCTCTAATGAGAAACTCTCTTGAGTCAAGAGTGTTATC
GCATAGTGAGACATGCGAGATGCTAGCAAAAAGACTGACACGATAATTCA
CAATCATCGAGTACAAGATGAACTTATTATAGAGGTACCGTCTAGCTAGT
CACTCCACCGGAAAGAGGAGTACTGGTCACGGCTTCCAAACACAGTCTAC
ATTGTGCTGAACAACTGACTGTCTGATGCTCATCTGTGCTAGCACATTCA
TCTTCAACATAAGATGGAGTCACTCGGCTACTGACCCTTCATGCTTATCA
A
UFO04906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Utx-RD | 3591 | CG5640-RD | 114..884 | 9..776 | 3780 | 99.6 | Plus |
| Utx-RA | 3609 | CG5640-RA | 114..884 | 9..776 | 3780 | 99.6 | Plus |
| Utx-RB | 3446 | CG5640-RB | 146..419 | 506..776 | 1250 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10278250..10278598 | 405..57 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 10276392..10276568 | 693..517 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 10277813..10277927 | 518..404 | 575 | 100 | Minus |
| 2L | 23513712 | 2L | 10276046..10276113 | 760..693 | 340 | 100 | Minus |
| 2L | 23513712 | 2L | 10278649..10278698 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:31 has no hits.
UFO04906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:46 Download gff for
UFO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5640-RA | 114..884 | 9..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:18 Download gff for
UFO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Utx-RA | 114..884 | 9..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:01 Download gff for
UFO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Utx-RA | 114..884 | 9..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:01 Download gff for
UFO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10278250..10278596 | 59..405 | 100 | <- | Minus |
| 2L | 10278649..10278698 | 9..58 | 100 | | Minus |
| 2L | 10276027..10276112 | 694..776 | 96 | <- | Minus |
| 2L | 10276392..10276567 | 518..693 | 100 | <- | Minus |
| 2L | 10277814..10277925 | 406..517 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:18 Download gff for
UFO04906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10276027..10276112 | 694..776 | 96 | <- | Minus |
| arm_2L | 10276392..10276567 | 518..693 | 100 | <- | Minus |
| arm_2L | 10277814..10277925 | 406..517 | 100 | <- | Minus |
| arm_2L | 10278250..10278596 | 59..405 | 100 | <- | Minus |
| arm_2L | 10278649..10278698 | 9..58 | 100 | | Minus |
