UFO04909.5prime Sequence
1067 bp (920 high quality bases) assembled on 2009-06-22
> UFO04909.5prime
CAGTCGACTTTAAAGCTGTCTTAACATGTTTTCGCCCCGTCGTCGCCTCA
CACAGAAGATATTGCGCTAATCCCGGCCAGGCAATGAAGTACTTAAACGT
GGCTGAGAAGAACGACGCCGCCAAAACGATTGCCGGCCTGCTGTCAAATG
GCGCAGCACAAAGGCGCGAAGGCTACTCGGTGTACAACAAGGTCTTCGAT
TTCGAGGCCCCTGTGCGCGGTCAGAATGCCAAAATGGTTATGACCTCCGT
ATCCGGCCACATGATGCAGCTGGCATTCCAGGTGTCTTACAAAAATTGGA
GAACGGTGGATCCGCGCTCTTTATTCGACGCGCCGGTGAAAAAGGGCGTG
GGCTCGGATTATGAGCCTATCAAAAGGACCTTGGAACGCGAGGTGCGCGG
CTGTCAGGGATTGATTATCTGGACGGATTGCGATCGCGAGGGCGAGAACA
TTGGCTACGAGATTATTGATGTGTGTCGCGCTATCAAACCGAATATTTCG
GTTTATCGTGCCACTTTCTCGGAGATTACCACGGTGGCGGTGCGTCGGGC
TCTGCAGCAATTGGGGCAGCCGGACAAAAGGCAGAGCGATGCAGTGGATG
TGCGCACGGAACTGGATTTGCGAACTGGTGCCGCCATCACCCGGTTTCAG
ACAATGCGCCTACAACGTCTGTTCCCCGAAAAGATAGCTGATAAGCTCAT
ATCCTATGGAAGCTGCCAAATTCCCACCCTGGGATTCGTCGCCGAACGGT
ACAAGGAGATTGAGGCCTTCGTATCCGAGCCATTTTGGAAGATTAAGGTT
CTGCACACAATTGATGACTTGACGGTGGAGTTTAATTGGGCCCGAAACCG
ACTCTTCGATAAGGAAGCTTGTGAAAACTATTTGCTCCTCTGCCTGGCCG
AACCCGATCCTAGAGCGCTCGTGGAGAGCGTCACCGTTAAGCCCAAACAC
AAAATGGGGCCCCACCTCCGCTGGGAAACGGGGGAAATGAAGAGCATTGC
TGCAGGAAACTCAAGCTACTTCCCAGGGAAGCAAAGACAATAGCCGAAAA
ATTAATATACTAAGGTT
UFO04909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3alpha-RA | 3925 | CG10123-RA | 74..1124 | 12..1065 | 4865 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19498459..19499093 | 164..798 | 3175 | 100 | Plus |
| 2L | 23513712 | 2L | 19499145..19499399 | 798..1054 | 845 | 89.5 | Plus |
| 2L | 23513712 | 2L | 19498241..19498393 | 12..164 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:36 has no hits.
UFO04909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:13 Download gff for
UFO04909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3alpha-RA | 58..1115 | 6..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:49 Download gff for
UFO04909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3alpha-RA | 69..1126 | 6..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:15 Download gff for
UFO04909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3alpha-RA | 69..1126 | 6..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:15 Download gff for
UFO04909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19498236..19498393 | 6..164 | 98 | -> | Plus |
| 2L | 19498460..19499093 | 165..798 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:49 Download gff for
UFO04909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19498236..19498393 | 6..164 | 98 | -> | Plus |
| arm_2L | 19498460..19499093 | 165..798 | 100 | -> | Plus |
