UFO04911.5prime Sequence
1114 bp (976 high quality bases) assembled on 2009-06-30
> UFO04911.5prime
CAGTCGACATGAAGAAGGTTCTATTGACCAAAGCCCAGCACATCCAACCA
GTCGTCGCTAGTAGTTCGGATGTTTTGGTGATCAAACCAGTCGGTTCCCT
GCGAGTGATATCCATCTCAGCGCCACATAGTGCCTCTACCTACATCCAGC
GCAAGTCCTTCCAGCCCGTCTACGAGGACATCTTCAAATTACTCATGAAA
ATCCCAGACAAAGCCCTTACCCAAAGGGTGATCGACGCGATAAACGAGAG
CAATAATAACGATAAGGTCGCTATCTCCAATCACGGTAAACAATGTTCGT
GCGGAGTCCAAAAAGTCGATTCATCTACACAAACGGATTGGGACACCGAG
GAAACGCATATGCCTGGCATTACAAATAATTCATGCGAAGCCAAAGGGAA
TAGGCATAGCCACATGACCAGTTCAAGTTCCGAACCTATAAAACCGCCAG
TAGATCCGACCAAAGTTCCTAAAAAGCGCGGTAGAAAGCGAAACACCTGC
GTGCCACAGGTGGTCAAGCGATCAGCGGCTGAGATGGCGCTTAAGGAGCG
CGAGGAGAAGCAACTGACGCCCGTGATCACTAAACGGAAGAAAAGGGATG
TCACCCAAGCGCAAAACTTCGAATCATATCAGATCACGAATAAAACCCCT
GTACGCCGAAACTCTACCTTGTCGGATATATCGTTCAACTCCGATGAGTT
GACCCGGGTGGAAAACTTTATAAGCGGAAACACCGAGGACCGCATTATAC
GCATCATGGCCAACGAATTCAGAAAGTCGCACATAATGTCCGAAGAAGGA
TTGCTACCCATTCACGAGGAAATACTGCACGGCGATGTTTACGGCGTTAA
GCGTCAGATATTTGTGTGCTGCCACGCGAAAATGGACATCAACGAACTAC
TCACCAGGGACGGCGAGGACTGCCCTGGAACTTGCGCTGACGAACGACAC
GGACACCGAGATTGTATCGCCTCATCCTGGACGCCTCGCATGATGACCGA
CCACCTCTACGAGAAACTCAAACCACAGCTCTTTCATTCTGGGCGGGTGA
TAACCCATATTAAATTCAGGTCATTAGGCTGCTGTTTGCGCCGATCGACT
GACAGTCTTCTGGC
UFO04911.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5118-RA | 1801 | CG5118-RA | 187..1284 | 9..1112 | 5070 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1172023..1172619 | 605..9 | 2985 | 100 | Minus |
| 2L | 23513712 | 2L | 1171714..1171913 | 805..606 | 1000 | 100 | Minus |
| 2L | 23513712 | 2L | 1171437..1171643 | 1015..806 | 900 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:20 has no hits.
UFO04911.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:44 Download gff for
UFO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 119..1130 | 1..1015 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:29 Download gff for
UFO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 179..1190 | 1..1015 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:13 Download gff for
UFO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 179..1190 | 1..1015 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:13 Download gff for
UFO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1171437..1171643 | 806..1015 | 98 | <- | Minus |
| 2L | 1171714..1171913 | 606..805 | 100 | <- | Minus |
| 2L | 1172023..1172623 | 1..605 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:29 Download gff for
UFO04911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1171437..1171643 | 806..1015 | 98 | <- | Minus |
| arm_2L | 1171714..1171913 | 606..805 | 100 | <- | Minus |
| arm_2L | 1172023..1172623 | 1..605 | 99 | | Minus |
