UFO04912.5prime Sequence
1070 bp (991 high quality bases) assembled on 2009-06-30
> UFO04912.5prime
CAGTCGACATGAGCAGCATGAAGGGCAGCTTCGCCACACTGAACCGCTGG
TTTGGCCGAAAAAAGGACAAATCCGGCACTGGCAACTCCTCCATGGGCAA
GTTGTCCAAGTCGTCGACACAGCTCCACCATTTGTCCACGGACACGGACA
TCAACGAGACTAGTCAATTGGAGTACAACCGGATAACCCCGGTGCCCGCG
GCAACCAGCAATGCGCCCTTTGAACAGACCTTCCGCATCACCGTTCTGCT
GCCGAAGGATCAGCTCTTCGTGGCCCGATTGGGAGCCAGAGTTCCACTGA
GTAAGCTCTTGTCCCTCGTCTGCGACAACAAGCAACTGGATGCGGACAAG
TACGAGTTTCGCAGTCCAGTGGATGCTAGTCAGGTGTACAGCTGCGAATC
AACGATCGGAACAGTGGGTCTCTCAGAGATCCGACTGTGCCACAAGTCGG
AGTCCTATGACAACTTCAATCCGGACGTAATGCACAAATTCCAGCGCACC
GGTGTCGCTCGAGACTCGTTGAGCAGCAGCTCGGACTTCAGTAGCAGCCG
GCACTCAAAGGTCACGGCCAAAACGCCGAGTCCGTACAGTTCCAGCAACT
CACTGAACTCCATGGACTCCACGGGAATGAACTACACTCGTACCCCGGTG
GTGGTGCCACCAGCAAAGGTACTAGCACCGCCACCCCGCAAAAAGCGAAC
CGCTCCTCGGCCGCCAAGCCAGGTTTGCATTCCAGAGCAGTCTGTTCCGG
ATATTCCAGCTGCTAACTCGAAAAGCGAACCCGCTTATGCGGTAATTGTC
AAGCGCCCCCAGCTCTGCATGTCCACGCCCAACCTCTCCGGTCCCTTGTA
GTTGGACTGCAATGGTAACGGCTCAAAGTCGCCGGATGAAGACTCAACGG
ATGGGCATTATGCTACACTGGATCTGAAACCTCCGATTGCTGGCGGTCCG
GAGCCAACGGCTCGAAAGCGATTGCTGCAGATCAAAAAGAAACGCACGGC
TCAACGACGGACTTCAAAGTTGAGGAAACAAATATATCACTGCCTCACTA
CGACCGTTCACACTACCGGA
UFO04912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ptr-RE | 4207 | CG2841-RE | 231..1282 | 5..1051 | 4970 | 98.6 | Plus |
| ptr-RD | 4955 | CG2841-RD | 662..1713 | 5..1051 | 4970 | 98.6 | Plus |
| ptr-RA | 4599 | CG2841-RA | 306..1357 | 5..1051 | 4970 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2348255..2348880 | 992..367 | 3085 | 99.5 | Minus |
| X | 23542271 | X | 2348945..2349248 | 369..66 | 1520 | 100 | Minus |
| X | 23542271 | X | 2349342..2349403 | 66..5 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:23 has no hits.
UFO04912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:45 Download gff for
UFO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ptr-RA | 304..1372 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:04 Download gff for
UFO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ptr-RA | 304..1372 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:13 Download gff for
UFO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ptr-RA | 304..1372 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:13 Download gff for
UFO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2348176..2348877 | 370..1063 | 97 | <- | Minus |
| X | 2348945..2349247 | 67..369 | 100 | <- | Minus |
| X | 2349342..2349405 | 1..66 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:04 Download gff for
UFO04912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2242209..2242910 | 370..1063 | 97 | <- | Minus |
| arm_X | 2242978..2243280 | 67..369 | 100 | <- | Minus |
| arm_X | 2243375..2243438 | 1..66 | 96 | | Minus |
