UFO04913.5prime Sequence
1113 bp (1014 high quality bases) assembled on 2009-06-30
> UFO04913.5prime
CAGTCGACATGCTGCAGCAAATCAAGATGCTGGTGCTGGGCATCATCACG
CTGTGCCGGCGTGCCTTGTGCTGCTTCTCCAGGCGCCGCAAGCTCAGCCA
CAGCGGCTCCGCCACCGGATCCGCCGACCAACTGCAAGCGGTCAACGTGA
TCGTGGAGCGAGGCGACTTCTCCGCCACCGGCGCCACCTCCGCTGGCCAG
GCCGGCGGTGGCAGGACAGCGGGGGCGCGCGAGCGGGACTGGAACTCCTG
GGACGACAGTCCGCGCACCGTGGAGGAGCACATCGAGCAGTACCGCCAGC
GAATGGCCCAGCCACCCACTCCGCCCAAGGAGGAACCCGAACCGGACTTC
TTCAGTGAGCTGACGCCCACCATCAAGCCGCAGATGAAGTTCTACCTGGA
GGATCCATCCACGAGTGCGGCGACCAGCCAACAAAGTGACTTTTCAAGAC
TGCAGGCCCAGGACTTGGTGCCAATTAGCGTAAATGCCGATCTCGAGGAC
TGGGTGGATGATAATGCCGGCGGCTGGGAGGAGCTGGACACCTCCCAGAC
CAAGCACATTCTGCGTGAGAAGCGTCGTGAGTTGCGCCATCAGCGACAGC
CGCCCGTCCGCCCGGCCCCGCCCACTGTGGGCGCTCAGCGACTGACCGCC
GGACAGCGAGCGGCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTAAGCATTC
TGCCGACATGAGCCATCACAAACGCATGATGACTGATCGCCAGCGGCATC
AGCACTTGTCGCTGCGTATATATTTGCCCATGTGAACCGGGGGCGAGAGT
GTCATATGCCGGTATCAACTGGTACTCACCCAGGATGCTGAACGAACATT
CCCAATAACTTAG
UFO04913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32536-RA | 887 | CG32536-RA | 75..731 | 9..665 | 3285 | 100 | Plus |
| CG32537-RA | 2442 | CG32537-RA | 323..631 | 357..665 | 1545 | 100 | Plus |
| CG32537-RA | 2442 | CG32537-RA | 1..64 | 294..357 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19276476..19276824 | 357..9 | 1745 | 100 | Minus |
| X | 23542271 | X | 19275160..19275339 | 665..486 | 900 | 100 | Minus |
| X | 23542271 | X | 19275399..19275528 | 486..357 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:22 has no hits.
UFO04913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:14 Download gff for
UFO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32536-RA | 40..710 | 1..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:38 Download gff for
UFO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32536-RA | 66..736 | 1..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:30 Download gff for
UFO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32536-RA | 66..736 | 1..673 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:30 Download gff for
UFO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19275155..19275339 | 486..673 | 97 | <- | Minus |
| X | 19275400..19275528 | 357..485 | 100 | <- | Minus |
| X | 19276477..19276833 | 1..356 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:38 Download gff for
UFO04913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19169188..19169372 | 486..673 | 97 | <- | Minus |
| arm_X | 19169433..19169561 | 357..485 | 100 | <- | Minus |
| arm_X | 19170510..19170866 | 1..356 | 99 | | Minus |
