UFO04915.5prime Sequence
1166 bp (1060 high quality bases) assembled on 2009-06-30
> UFO04915.5prime
CAGTCGACATGCGCTTGACAACGCTGTGGCAGAACCGCTCGCCTGGCGAC
CGCCATCTGAGTACATACTTTTGCTTTGCGGCGGTGCGTCTGCTGCTCGT
CTTTGTGCCCCAACTGGGCTACGTGCATCCGGATGAGTTCTTCCAGAGCG
TGGAGGTAATGACTGGCGATCACTTTCGGCTGGAGCATACGCGCACCTGG
GAGTTCAACAACTCCCTGCCGGTGAGGTCAATCGTTCTGCCCTTCGCTCT
GCTCCGGATTCCCTGGAGCTTCTACGAGTTCGTTGCCGAGTGCCTGAAGG
CCTGGTGGCAACTGGAGCTGCTGGGCACCTACGCGTACGTGGTGTTCCCC
CGGCTGATTTACACTCTGATCTCCTTTAGCAACGACTACTGCTTGTTCCG
CATTTGCCGGTTGTACGGACTCCGATTCGAGATACGCCTCTTGGCAATGG
GCAGCTCCTGGATTCTTCTCGTCTTCGGCACGCGCACCTTCTCCAACAGC
CTGGAAATGGCCATGTGCTCCTGGCTGCTCTGCTTGGTATCGGAATGCAT
GTTGCGCACGAACACGGTGGTGTACAAAAAGGAGTTTCTGGAAGAGAAGT
ACGACAAGGCGGAGTCCATCAGCGAAAGGGTGCGCATTTGGAAGCTGAAG
AACTCCCTGCCCGCGCACAATCTGCAGCACCTAATGGCCATGTCAACCAT
TTGCGTAGCTGGCGTGTTCAATAGACCTACATTCCTGCTCTTTGGAGCAC
CGATGGTCTTCTTTTGGCTGCTGCGAGGCATGGGAACCAGAAGCATCACC
TTCAGGGACTTTAATCTGCGCATTGCTCTCTTCTGCTTGTGCGCCTTGCC
TGCTCTAGTACTGTTTATATTCTGCGACTCACTGTACTACCAGCACTTGA
CCCTCGGAGAACTGCACATGATGCACTTGAGCATCGACAACTTTGTCTTC
ACGCCCTGGAACTTCATAAAAGCCAACCTGGATTCGGCACAGACGGCCAG
GCATGAGTCCACCCATGCTATGTCCACTGATGGTCAACATGCATGCTGTC
ACGTCTTGCTTGGCCTTGCTGGGAACTCGCAAGTGCTGCTCGATTCTTCG
GGCGGAATATCAGTGCTGCCGGTTCCAGCATTCTGTCATGAGTCGGCCAT
TGGGCCCTCTCTCTTT
UFO04915.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45069-RB | 3221 | CG45069-RB | 94..1221 | 9..1121 | 5225 | 98.3 | Plus |
| CG45068-RA | 3221 | CG45068-RA | 94..1221 | 9..1121 | 5225 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24412177..24413056 | 165..1042 | 4285 | 99.7 | Plus |
| 2R | 25286936 | 2R | 24411963..24412120 | 9..166 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:19 has no hits.
UFO04915.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:16 Download gff for
UFO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RB | 67..1108 | 1..1042 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:10 Download gff for
UFO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RA | 67..1108 | 1..1042 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:01 Download gff for
UFO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45068-RA | 88..1129 | 1..1042 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:01 Download gff for
UFO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24412178..24413056 | 166..1042 | 99 | == | Plus |
| 2R | 24411957..24412119 | 1..165 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:10 Download gff for
UFO04915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20299480..20299642 | 1..165 | 97 | -> | Plus |
| arm_2R | 20299701..20300579 | 166..1042 | 99 | == | Plus |
