UFO04917.5prime Sequence
1145 bp (1031 high quality bases) assembled on 2009-06-30
> UFO04917.5prime
CAGTCGACATGAATAATGCGAAAGCCATTTTAGAGGGTCCGAGACAACGG
CGAAGAAAGGAGAAAGAAAGGCCGACCGCTGTGATAATACCCGATGCTCC
AAAACAAATTAGCATAATCAAGGCGCCTGCCCAATGGCTGACCATTGAGA
GATACATACATCTATTGAGAAAAAAACGCACTTTTGTGCCGCGATCATTA
ACGCGATCAAATGCAAATGAGGCGACATCAGTCAAGCGGCCGAAAGCGAA
ATGTGCAGCAGCATCATCAGCTCGAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGGTATTCACT
CCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAG
GGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGA
AATTCCGGATGAGCATTCATCAGGGGGCAGATGTGAATAATGGCGGATAA
ACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAGCGTATATCCAGCTGAC
GGTCTGGTATAGTTACATGGAGCACTGACTGATGCTCAAATGTTCTTACG
ATGCCATGGCATATATCACGGGGGATTCAGGAATTTTCCATTAGC
UFO04917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42445-RA | 1043 | CG42445-RA | 133..399 | 9..275 | 1335 | 100 | Plus |
| CG42445-RB | 1062 | CG42445-RB | 235..490 | 20..275 | 1280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8155325..8155580 | 275..20 | 1280 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 843..910 | 123 | 68.1 | Plus |
UFO04917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:18 Download gff for
UFO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 121..400 | 1..284 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:15 Download gff for
UFO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 127..406 | 1..284 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:59 Download gff for
UFO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 127..406 | 1..284 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:59 Download gff for
UFO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8155322..8155587 | 13..280 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:15 Download gff for
UFO04917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8148422..8148687 | 13..280 | 97 | | Minus |
