UFO04919.5prime Sequence
1120 bp (1008 high quality bases) assembled on 2009-06-30
> UFO04919.5prime
CAGTCGACATGCTCTGCTGGGCCAACGAGGATCACTATCTGAGCCAACGC
TACCCGAATCCGCAGCAAAAGGCGCCAGAAACGCTTAAGAACCTGCTGTT
GCGATCCAGTGTACCGATAGTGGGTGCTCCGAATCCCGAGAAGGACTCGC
ATTTCGCCGGCACCATGGCACCGCTCAAGGGTCAGGAGGTGCTTAAGTTC
CACAAGCACTCCTACCTCGAGAACCGCATCTTCGATCACCGCCTGGTCAA
GGACAACCTGCTGGACAAGTGGCCCACCGCTGACATGAACGAGTACAACG
AGCGCAAGGACCACCGCAACCTCATGGAGTCCTATCCATGGAGCCAGGCG
GGCGCTCCGCCCTGCATGGAGCCCGTCATGGGGCCTTCGATCCCGCCGAG
AGTTGGCGCCGCCTACGAGACGCCCACGAAGCACCCGTGGCGCCCTGCTA
TGGCCTATGAGCTAATCCAGGTGAAGCATATGCCCGAGCAGCCGGTGACC
AACCAGCTGACCAAGCAGTGCTTCCTGCCCAAGGGCATGAAGACGGACGG
CATGATATTCCCCAACTTGGTCACCGGGTTCGATCGCAATCCACAGCACG
CCGCCCGGGCTGCCCTCTACACGCGGTACACCAGCAACGAGTGGTACAAC
AACAACATGACCAAGTACTCCGAGTCGAACATGAATCGCAACCTCTCGGA
GCGCATGCGGAATGACGCAGTGCGTCTGATGCGGGAGACGGACGAGAAGG
CCACCTCGGGCCAGAGGGACGCCGGCCGAAGGCTGGGCGAGCGCATCACC
GACCTGACCTTCTGGCGCAACGAGCTGAACGCGGAGCTGGAGAAGCTGAT
CGCCGAGATGTCGGACATCAACGAGCTGCAGCGGCAGTGCGGCAAGGCAC
TTCTCGACCTGGAGATACCACTGCACATCGGCCCAGGAGTGCCTCTTTCA
CGAGAGTCGCGCAGGGCACGGAGTAGGTGCATGACATTCGTGGAGAAGGC
CTCCTCGTGGATCAACACTTGAGACTCCCGTGACCGCTAGGCGGCTGCAC
GAAAAGATCTCGAGCAGGCCCTCACTGGCCGCGCGCCAGACCTCCTCGAG
ACGAGTGTGCCGAGGGAGTC
UFO04919.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32820-RA | 2418 | CG32820-RA | 290..1393 | 9..1100 | 5050 | 98.1 | Plus |
| CG32819-RA | 2191 | CG32819-RA | 63..1166 | 9..1100 | 5050 | 98.1 | Plus |
| CG17450-RB | 1995 | CG17450-RB | 63..1166 | 9..1100 | 5035 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21607507..21607859 | 688..336 | 1765 | 100 | Minus |
| X | 23542271 | X | 21613599..21613951 | 688..336 | 1765 | 100 | Minus |
| X | 23542271 | X | 21619691..21620043 | 688..336 | 1765 | 100 | Minus |
| X | 23542271 | X | 21614624..21614950 | 335..9 | 1635 | 100 | Minus |
| X | 23542271 | X | 21620716..21621042 | 335..9 | 1635 | 100 | Minus |
| X | 23542271 | X | 21608532..21608858 | 335..9 | 1620 | 99.7 | Minus |
| X | 23542271 | X | 21607071..21607384 | 1001..688 | 1365 | 98.4 | Minus |
| X | 23542271 | X | 21613163..21613476 | 1001..688 | 1365 | 98.4 | Minus |
| X | 23542271 | X | 21619255..21619568 | 1001..688 | 1365 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:52 has no hits.
UFO04919.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:51 Download gff for
UFO04919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32820-RA | 53..1151 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:22 Download gff for
UFO04919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32820-RA | 53..1151 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:48 Download gff for
UFO04919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32819-RA | 53..1151 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:48 Download gff for
UFO04919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21613175..21613475 | 689..988 | 98 | <- | Minus |
| X | 21613599..21613951 | 336..688 | 100 | <- | Minus |
| X | 21614624..21614959 | 1..335 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:22 Download gff for
UFO04919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21484202..21484502 | 689..988 | 98 | <- | Minus |
| arm_X | 21484626..21484978 | 336..688 | 100 | <- | Minus |
| arm_X | 21485651..21485986 | 1..335 | 99 | | Minus |
