UFO04920.5prime Sequence
1112 bp (987 high quality bases) assembled on 2009-06-30
> UFO04920.5prime
CAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGTCAGAGAAT
CTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTCCAGTCGCA
ATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTGTCAGTTCA
TGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCAAATTTCGT
ACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTGCAGGCGGG
CTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAAATTAGTCA
AGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTAAAAAGTTC
TTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCGGTGCGCGA
GGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACTGCCCGGCA
CGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCATCGGCAACG
ACACGCCCAGCAATGACGTCTGCAGTGAAGCCCATATCCAAGGTGCTGCC
GCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGCCTGTGCCAACA
GCACGGGCACGGTCAAGAAGAACGACGTGAGCAATTCGGTCAACAATCAA
CAAATAGAAGAGATGTCAAATCAGGTGATGGATATGCGCATAAACCTGGA
GGGATTGGAAAAGGAGCGAGACTTTTACTTCTCTAAGTTGCGGGATATTG
AAATTCTTTGCCAAGAAGCCGATGACGCCGAGGCGCATCCGATCATACAA
AAGATTTTGGACATCTTATATGCGACTGAGGATGGTTTTGCGCCGCCTGA
CGATGCACCACCAGAGGACGAGGAGTATGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATAATCATAATCATATCA
TATCACACTAGCCTAGAGATCCTGTCATGACTAGTGCTTGATTCTCACCA
ATAAAAAAACGCCCGCGCACGAGCGTTCTGAACAAATTCCAGAATGAGTT
CTGAGTCATTACTGATTTATCAACAGGAGTTCCAGCGAGCTCGATATCAA
TACGCCTCGCCT
UFO04920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RE | 1870 | CG3265-RE | 194..1065 | 7..878 | 4360 | 100 | Plus |
| Eb1-RG | 2043 | CG3265-RG | 101..975 | 7..878 | 4320 | 99.7 | Plus |
| Eb1-RA | 1873 | CG3265-RA | 194..1068 | 7..878 | 4320 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25202057..25202847 | 7..804 | 3130 | 93.9 | Plus |
| 2R | 25286936 | 2R | 6754178..6754438 | 274..534 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 6752841..6752988 | 128..275 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 6754705..6754847 | 535..677 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 6752662..6752786 | 7..131 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 6754894..6754981 | 670..757 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6755045..6755118 | 758..831 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 6755183..6755232 | 829..878 | 250 | 100 | Plus |
| 3L | 28110227 | 3L | 7767898..7768147 | 361..112 | 245 | 73.2 | Minus |
| 2R | 25286936 | 2R | 6753251..6753318 | 300..367 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:01 has no hits.
UFO04920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:53 Download gff for
UFO04920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 224..1106 | 1..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:29 Download gff for
UFO04920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 189..1071 | 1..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:54 Download gff for
UFO04920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 189..1071 | 1..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-29 00:06:54 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:07:29 has no hits.
