UFO04921.5prime Sequence
1127 bp (1029 high quality bases) assembled on 2009-06-30
> UFO04921.5prime
CAGTCGACATGAACAAAGTGGGCAAGCACATTCAAAGCGGCATCGGTGGA
GCACCCAACGCGGCATTGTCCACGGCGGCTCTACTGGGTACTCCGCTGGA
GGCGACCAATGGTGCTGGCTCGACCAGCACCACCAATGTATTCAATTCCA
TCATGAGCTTTCTGCCGGACAATCGACCCATCACCTCGCTGCACATCGTC
GAGGATTTCGAGCGCTGCCCGAAGAACTTCAGTGCCATAAGCCGCACCTA
CGACCAGGATTCGGATGCGGACCTATGGCGCGACTACAGCCTGTTTGGAC
GCCAGAACACACGCTACCTCTGCCTGTCCAAGTCCGAGGGCCTGCCGGAA
TACGTGGTGGAGACCCTACAAGTGATTTCGGATAAAACGCCGCCGCCCAA
GGAATTCTCGCAGGTCTCCCGCACTGCCGATAGCGACCAGAAGGCCTGGC
GCAAGCGGCAGTTGATCTACAAGCTCTCCAAGCGCGGCACTGTGACCCAG
GCGGTCACCGACATAATACTCTGCTCCAAGTTGAAGGCAGCGCCCGATGG
CTTTAAGCTGGCCGGCGATATCAACGGAGTGCTTATCTGCTACAAAACCA
GCGCGATCCCAGTGCGCCTTTCGCCGCCAGTGCCAGGTGGAGGATTGCCA
GCTCCAGCCACTTGCGAGGTGGAGCAGGCCCTGAACCGCCTGAATCTCCA
GGGTCAACGCAACTCACGTGGACCACTGCCACAACCGCCGACTGAACACC
ATGACTATGAGGAGATCCAAGCCAACTATCAAATAAACTCGCCACAGCGA
CCGGCGCCACCGCGGCCAGCGGGAGTGGGTTCTGGCGGAGGACACGGTAC
TTACGGCGGAACGGGCACCTTGGGCACCTACACCGAGCTGGAGGAGTGCC
TTTCGTCATGGACGTTAGGCTGCAGCGCAACCAAGCTGTGATGATATACC
TACACTGCCAGAAATCTCTACGCTGCTCAAGTCCCTGGACTATGACTTTC
AGCTGGGACGTCAGATCTTGTGCACCATGAGTCATCGGCATCTAGACCCG
TTCTTTAGCAGCTTCTTAGAACATCCGTGGGCGCGGCCAGTAATGGCTAT
CTATCTATCTAACTATCCACTAGCCTA
UFO04921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7192-RD | 2101 | CG7192-RD | 209..1262 | 9..1057 | 5130 | 99.4 | Plus |
| CG7192-RB | 1928 | CG7192-RB | 36..1089 | 9..1057 | 5130 | 99.4 | Plus |
| CG7192-RA | 2126 | CG7192-RA | 234..1287 | 9..1057 | 5130 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18098868..18099222 | 725..371 | 1775 | 100 | Minus |
| X | 23542271 | X | 18098584..18098800 | 941..726 | 1035 | 99.5 | Minus |
| X | 23542271 | X | 18099506..18099711 | 214..9 | 1030 | 100 | Minus |
| X | 23542271 | X | 18099287..18099443 | 370..214 | 785 | 100 | Minus |
| X | 23542271 | X | 18098412..18098511 | 1044..946 | 435 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:13 has no hits.
UFO04921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:19 Download gff for
UFO04921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7192-RB | 30..1091 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:37 Download gff for
UFO04921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7192-RA | 228..1289 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:09 Download gff for
UFO04921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7192-RA | 228..1289 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:09 Download gff for
UFO04921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18098868..18099222 | 371..725 | 100 | <- | Minus |
| X | 18099287..18099442 | 215..370 | 100 | <- | Minus |
| X | 18099506..18099715 | 1..214 | 98 | | Minus |
| X | 18098395..18098511 | 946..1061 | 94 | <- | Minus |
| X | 18098579..18098800 | 726..945 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:37 Download gff for
UFO04921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17992428..17992544 | 946..1061 | 94 | <- | Minus |
| arm_X | 17992612..17992833 | 726..945 | 99 | <- | Minus |
| arm_X | 17992901..17993255 | 371..725 | 100 | <- | Minus |
| arm_X | 17993320..17993475 | 215..370 | 100 | <- | Minus |
| arm_X | 17993539..17993748 | 1..214 | 98 | | Minus |
