UFO04922.5prime Sequence
1106 bp (1029 high quality bases) assembled on 2009-06-30
> UFO04922.5prime
CAGTCGACATGAAGAGCGTGCTGATGGTGGCCGAGAAGCCCTCGCTGGCG
GCCTCGCTGGCGGGGATTCTCTCAAACGGACGCTGCACGGCCAAGCGTGG
CACCGGCAACGGCTGCTCCACGCACGAGTGGACGGGCAACTTTCGGAACG
AGGGCAGCGTCCACTTCCGGATGACTTCCGTGTGCGGTCATGTCATGTCG
CTGGACTTCAATAAGAAGTACAACTGCTGGGACAAGGTGGATCCCATCCA
GCTCTTCGGTTGTGCCACCGAAAAGAAGGAAACGAATCCCAAGCAGAACA
TGCGCAAATTTCTGGCCCACGAGGCGCGCGGCTGTGACTATCTGGTGCTC
TGGCTGGATTGCGACAAGGAGGGCGAGAACATCTGCTTCGAGGTGATGGA
CGCCGTGAAGCATGTCATCAACAATGTGTACAGCGATCAGGTGACATACC
GTGCCCACTTCTCGGCTATCACGGAGAAGGACATCAAGAAAGCCATGGAG
ACGTTGGGGCATCCCAACGAGAACGAGGCCAAGTCGGTGGACGCCCGGCA
GGAATTGGACCTGCGCATTGGCTGCGCCTTTACCCGCTTTCAAACGAAGT
TCTTTCAGGATCGCTACGGTGACCTGGATTCGTCGCTGATCTCCTACGGT
CCCTGCCAGACGCCCACGCTCGGTTTCTGCGTGAAGCGGCACGACGACAT
CCAGACCTTTAAGCCGGAGAGCTTCTGGCATCTGCAGCTCCTCGCCGGCC
AGCCGGAAGTCACGCTTGAATGGGCGCGCGGTCGGGTCTTCAAGAAGGAC
ATCGCCATCATGCTGCTGATCGCGTCAAGGAGCACAAGATGGCCACTGTG
GAGAGCGTGGCCAGCAAGGAGGCCTACAGAGCAAACCACAGGCACTGACA
CCGTCGAACTGATGCGTATCTGCAGCTCCGGACTGGGCATCGGACCCTTC
CAAGGCGATGCAGATAGCTGGAGCGCCTGTACCCGCAGGGCTACATCAGC
TATCCGCGGAACAGAGAACCATCAGTATCCGACTACTTCGGTCCTGGCGG
CGTGCTGCCGTGCGTGAAGCCATCGCGACTTCGGTGGAGGAGGCTCGTCT
CTATTG
UFO04922.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 3296 | CG3458-RB | 259..1347 | 8..1094 | 5035 | 98.2 | Plus |
| Top3beta-RA | 2963 | CG3458-RA | 259..1347 | 8..1094 | 5035 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6286822..6287570 | 846..99 | 3680 | 99.7 | Minus |
| X | 23542271 | X | 6286295..6286482 | 1035..847 | 660 | 95.8 | Minus |
| X | 23542271 | X | 6287640..6287732 | 100..8 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:15 has no hits.
UFO04922.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:49 Download gff for
UFO04922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 233..1284 | 8..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:38 Download gff for
UFO04922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 259..1310 | 8..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:38 Download gff for
UFO04922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 259..1310 | 8..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:38 Download gff for
UFO04922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6286271..6286482 | 847..1058 | 94 | <- | Minus |
| X | 6286822..6287569 | 100..846 | 99 | <- | Minus |
| X | 6287641..6287732 | 8..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:38 Download gff for
UFO04922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6180304..6180515 | 847..1058 | 94 | <- | Minus |
| arm_X | 6180855..6181602 | 100..846 | 99 | <- | Minus |
| arm_X | 6181674..6181765 | 8..99 | 100 | | Minus |
