UFO04923.5prime Sequence
1109 bp (975 high quality bases) assembled on 2009-06-30
> UFO04923.5prime
CAGTCGACATGAATCTGCGGGGAAATCCTCCCAAGAAGGAGGGCAAAATG
CGCATTCGGGCCTTTCCGGCCTCCATGGACGAGAAGTACGTGGAGACCAT
TTGGGCCAGCTTAAAGAATGCTATCCAGGAGATACAGAAAAAGAACAACT
CCGGACTATCGTTTGAACAACTCTACCGGAATGCGTACAACATGGTGCTG
CATAAGCACGGCAATAGACTGTATTACGGTCTGAGGGAGGTCGTCTCAGA
ACACCTGGAGCACAAGGTGCGGGCGGATGTGCTGGAGGCTCTGCACAGCA
ATTTCCTACCCAAGTTAAACCAGGCCTGGACAGACCACCAGACATCTATG
GTGATGATCCGCGACATACTCATGTACATGGATAGAGTTTATGTGCAGCA
GCGCGAGGTAGACAATGTGTACAATTTGGGATTAATTTTGTTCAGGGATC
AGGTGGTTCGCTATTCTGAGATTCAAAAGGCCCTGCGAGAGAAGTTGCTG
GGCATGGTGATGGAGGAACGTCATGGCGAAGCCATTAACCATCTGGCTAT
CAAGAATGCTTGCAGTATGCTGATCACCCTGGGGATTAACTCGCGCACTG
TCTACGAAGAGGACTTTGAAAAGCCCTTCCTTGCGCAATCGGCGGCGTTT
TACAAATTCGAGTCGCAGAACTTTCTTGCCGAGAACAACGCTGGCGTTTA
CATCAAGAAAGTGGAAGCGCGCATCACGGAGGAATCTTCCCGGGCAGCGC
TGTATCTCGATAAAGGATACGGAGCCCCGCATTGTGCGCGTGGTCGAAGA
AGAGCTGATCAAAAAGCACATGCGACCCATTGTTGAAATGGAGAACTCGG
GCGTGGTGTACATGATCAAGAACTCAAAGACCGAGGATCTGGCCTGCACA
TATAAGCTTTTCTCGCGCCTGAAGGAGGAAGGGTCTCAAGGTGATAGCGG
ACACAATGTCGGCATATCTGCGAGAAGCAGGACGCATGCTGGGTTAAGAA
GAAGAAAAACGGCACACCGATCCCATAACATCTGCAGAACTTGCTGGATT
CTCAGACGCTCCACAGTTCTGGTGCACTCGTCGCACGATCGCATATTCCA
AACGCCATC
UFO04923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul3-RE | 3272 | CG11861-RB | 605..1707 | 8..1102 | 5005 | 97.8 | Plus |
| Cul3-RC | 3037 | CG11861-RA | 370..1472 | 8..1102 | 5005 | 97.8 | Plus |
| Cul3-RD | 4332 | CG11861-RC | 881..1983 | 8..1102 | 5005 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15268161..15268760 | 1049..450 | 2650 | 97.2 | Minus |
| 2L | 23513712 | 2L | 15268819..15269205 | 454..68 | 1935 | 100 | Minus |
| 2L | 23513712 | 2L | 15270904..15270965 | 69..8 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:42 has no hits.
UFO04923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:50 Download gff for
UFO04923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gft-RB | 600..1715 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:15 Download gff for
UFO04923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-3-RD | 876..1991 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:41 Download gff for
UFO04923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul3-RD | 876..1991 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:41 Download gff for
UFO04923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15268092..15268757 | 453..1109 | 96 | <- | Minus |
| 2L | 15268821..15269204 | 69..452 | 100 | <- | Minus |
| 2L | 15270905..15270970 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:15 Download gff for
UFO04923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15268092..15268757 | 453..1109 | 96 | <- | Minus |
| arm_2L | 15268821..15269204 | 69..452 | 100 | <- | Minus |
| arm_2L | 15270905..15270970 | 1..68 | 94 | | Minus |
