UFO04927.5prime Sequence
1150 bp (1035 high quality bases) assembled on 2009-06-30
> UFO04927.5prime
CAGTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGGTGGTGAAA
AACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCCTTTTGTTT
TGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAAACTCCAAA
ACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCCGCCTTCGA
GCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAACTGCGCGA
CACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCAACTGCTGA
AGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATCAGAGCGAA
AGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAGGAAACCAA
GGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGAACACTACA
GCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGACGGACACG
AGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTGGCCCTACT
TTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTTCTTTCCGC
CGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGCTCACGGGA
GTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGCACCCTGTT
CAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGATCGCACGA
CGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGGCCGCCGGG
GTCTTTCGTCACATCTACGATACGTTCACGAATGCACCATCGATGGACCT
GAAGCCACAGGTCCTGGACGTGCTCGTTTCCCTGATGCTTTCCCAGGCAC
GAGAATGCCTCTTTGAGAGCTTCAGCTGCAGATCGAGGCGATGAGCCACG
ATTGCAGCGTTTCGGGATCTGGCTGGCGAGGCTGCTCAAATATCGCACGA
GTACATGAGATGCACAGATATCCAGGCGACGATACGCCCACCTATCTTCG
ATGCTGGGCGGTCTGTGCAGTCAGCGACTCCTACAAGCATCGCACATTTC
CTAAGACGGAACATAATGCACAGAACGACGTAGCTCAAGTCAGTCAGAAC
UFO04927.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rhp-RA | 2381 | CG8497-RA | 104..1214 | 8..1100 | 5075 | 98.1 | Plus |
| Rhp-RB | 2536 | CG8497-RB | 259..1369 | 8..1100 | 5075 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15791460..15791902 | 505..946 | 2165 | 99.8 | Plus |
| X | 23542271 | X | 15791241..15791397 | 351..507 | 785 | 100 | Plus |
| X | 23542271 | X | 15790977..15791106 | 223..352 | 650 | 100 | Plus |
| X | 23542271 | X | 15790742..15790860 | 107..225 | 595 | 100 | Plus |
| X | 23542271 | X | 15790289..15790389 | 8..108 | 505 | 100 | Plus |
| X | 23542271 | X | 15792000..15792096 | 957..1049 | 290 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:32 has no hits.
UFO04927.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:21 Download gff for
UFO04927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RA | 108..1180 | 8..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:44 Download gff for
UFO04927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1331 | 8..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:19 Download gff for
UFO04927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1331 | 8..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:19 Download gff for
UFO04927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15791243..15791396 | 353..506 | 100 | -> | Plus |
| X | 15791462..15791902 | 507..946 | 99 | -> | Plus |
| X | 15790289..15790388 | 8..107 | 100 | -> | Plus |
| X | 15790743..15790859 | 108..224 | 100 | -> | Plus |
| X | 15790979..15791106 | 225..352 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:44 Download gff for
UFO04927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15684322..15684421 | 8..107 | 100 | -> | Plus |
| arm_X | 15684776..15684892 | 108..224 | 100 | -> | Plus |
| arm_X | 15685012..15685139 | 225..352 | 100 | -> | Plus |
| arm_X | 15685276..15685429 | 353..506 | 100 | -> | Plus |
| arm_X | 15685495..15685935 | 507..946 | 99 | -> | Plus |
