UFO04928.5prime Sequence
1122 bp (1018 high quality bases) assembled on 2009-06-30
> UFO04928.5prime
CAGTCGACATGTCGAAACGACCTCGACGCGCGGCATCCACAAAAAAGATA
GTAATTGAAATCTCCGACTCAGATGAGGAAGTGAATCTTACGGCAGACGA
CGATTACAGGCCGGAAGAAACCAAGAGTCGCATAATAGATCGCGCTGCAG
ATGCGCAGACCGTCGTGACCAAACGCCAGCGGTTCCCAACATCCAAAAAA
ACAGCTGCTGAGGGACCAGCTCCCAAGAAAAAGCGGGGCGACAAAGAAAA
GGCGGACGAGAATGCTTGTCCCAATGAGAACAATCCGGAATCGGTAGTCC
AGGACACACCTTCAACTTCAAACCAACGGAATGGAGCCGTAGGCACTGAA
CACAATTCCGAAGCTCCGGCTCCTAAGAGAAAACGCGCCAGAAAGGATAA
GGAGGACTTGAAAACGGCAGCCAATGAGACTAATCCTGAGAAGGGGGACG
TTGTGCCCTCAACAGCAGTGACACAACCAAACGATATCGTAGCCAGCTCC
TCACACAACAAGTCTTCCACTGGACGCAGTTCCTTCTGGGAGCGACGAAA
GGTGTGGAACATCGACGAGCTCCTGGCCGAAACGGAGAGCATACAACCGC
AGGCAGCTCGAAATATTGTAAAGCTCTTCGAGGATGAAAATACCATACCT
TTTATTTGCAGGTACCGTCGAGATCTGGTGGATCACATCGCTCCAGATCG
CCTTAGAGATATTCGGAACACGTACACAGAGATCGTCGATCTGCGGAAAA
GAGCTGAGAATATTATTGGTAAATTGCAGCGTGAAAACATCATGACTCCG
GAAATAAGAGAGGAGCTAATGTGCGCCAAGTCCAACGAAGAACTGGAGTT
CCTTTATGCCCCCTATAAGCCGGCCAGTAAGGGCACTTTGGCGGACGCGC
CAAAGCTTTGGGCTTGCAGTGTACGCCGATTGTTTACTGTACGGCTCAGC
ACCTAAGTCACTTTCTGAAGTGTGGACCGCGAAATGAGCTTTAGCTACGG
AGGCACTTGTGATGTCTGGATCTGCAATTATTATTCACAACATCAGCAAA
ACCAAATGTTTGAGAAATACGCGATGCAACGGTGAACTGATTCCTCAGTG
CACGCAGAACAAGGGAGGCAAT
UFO04928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31156-RA | 3193 | CG31156-RA | 155..1236 | 7..1072 | 5025 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22612786..22613284 | 665..167 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 22612324..22612727 | 1051..659 | 1525 | 97 | Minus |
| 3R | 32079331 | 3R | 22613342..22613502 | 167..7 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:56 has no hits.
UFO04928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:23 Download gff for
UFO04928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31156-RB | 119..1207 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:55 Download gff for
UFO04928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31156-RA | 148..1236 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:05 Download gff for
UFO04928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31156-RA | 148..1236 | 1..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:05 Download gff for
UFO04928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22613343..22613504 | 1..166 | 97 | | Minus |
| 3R | 22612289..22612724 | 662..1079 | 95 | <- | Minus |
| 3R | 22612790..22613284 | 167..661 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:55 Download gff for
UFO04928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18438011..18438446 | 662..1079 | 95 | <- | Minus |
| arm_3R | 18438512..18439006 | 167..661 | 100 | <- | Minus |
| arm_3R | 18439065..18439226 | 1..166 | 97 | | Minus |
