UFO04930.5prime Sequence
988 bp (902 high quality bases) assembled on 2009-06-22
> UFO04930.5prime
CAGTCGACATGCCCTCCGGTATAAGACCCATCGATGTTCTGCTGGAACGT
GCCGGTGTGCGCGGCCACCAGCGTGCACCGTCCGACTCCAAGGAGTTCCA
TGAGGTGACCAAACGGGATGCACTTCGTCTGCTGGAGCACGATGTGGACC
GTCTGCTGGAGACCACTGAGAAGGCCCGCCAGCCTGCCCTCAAGGCAGAA
ATGGGTCGTTTCGCCGATCTGTTCGGACGTTTCATTCAGGAAGAGGGTCC
CGCATTGGACTGGAACAAGATTCAGAAGCTGCCTGAGAATGCTGTGATGA
ACTACTCGAATCTTAAGTCGCCCAAGAACGAGCAGAATGAGATCCGCAAC
ATGTTGGATAAATTGGTGGTCATCAAGCTGAACGGTGGTTTGGGCACCTC
AATGGGTTGCCATGGTCCCAAGAGTGTGATTCCTGTGCGTTCGGATCTTA
CTTTCCTGGATCTGACCGTGCAGCAAATCGAGCATCTCAACAAGACCTAC
GATGCCAATGTTCCGCTGGTACTGATGAACTCCTTTAACACCGACGAGGA
TACCGAGAAGATCGTGCGCAAGTACAAAGGATTCCGTGTGCAGATCCACA
CCTTCAACCAGAGCTGCTTCCCGCGCATTAGTCGCGAGCACTACCTGCCG
GTGGCCAAAGACTTTGATGTCGAAAAGGATATGGAAGCCTGGTATCCCAC
CTGGACACGGTGACTTCTACGATACCTTCCGCAACTCTGGCCTGCTGAAG
AAGTTCATCGAGGAGGGCCGCGAGTATTGTTTCTTGTCAACATCGATAAC
CTGGGGCGCCACCGTCGATCTGACATCCTCAATAAGCTGGTGGGGCGAGG
AGCGGGGCCACTACTCAATGGAGTTTGTCATGGGAGGTCACCGACAAGAC
CCGGTCTGACGTTAGGGGTGGACTCTCCTCCAATGGAAAAAAGCTGCGCC
TGGTGGGAAAATGCTCCAGTGCCACCCACCAGTGGAGT
UFO04930.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RA | 2102 | CG4347-RA | 254..1221 | 9..976 | 4435 | 97.8 | Plus |
| UGP-RE | 2686 | CG4347-RE | 254..1215 | 9..976 | 4335 | 97.2 | Plus |
| UGP-RC | 2099 | CG4347-RC | 322..1241 | 57..976 | 4195 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9352882..9353230 | 688..340 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9353888..9354074 | 243..57 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 9352604..9352820 | 914..697 | 710 | 95.5 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 335..242 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 9357581..9357630 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:32 has no hits.
UFO04930.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:24 Download gff for
UFO04930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 253..1229 | 1..976 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:28 Download gff for
UFO04930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 245..1221 | 1..976 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:46 Download gff for
UFO04930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 245..1221 | 1..976 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:46 Download gff for
UFO04930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9352615..9352827 | 689..903 | 95 | <- | Minus |
| 3L | 9352882..9353228 | 342..688 | 100 | <- | Minus |
| 3L | 9353729..9353829 | 244..341 | 96 | <- | Minus |
| 3L | 9353888..9354074 | 57..243 | 100 | <- | Minus |
| 3L | 9357583..9357634 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:28 Download gff for
UFO04930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9345715..9345927 | 689..903 | 95 | <- | Minus |
| arm_3L | 9345982..9346328 | 342..688 | 100 | <- | Minus |
| arm_3L | 9346829..9346929 | 244..341 | 96 | <- | Minus |
| arm_3L | 9346988..9347174 | 57..243 | 100 | <- | Minus |
| arm_3L | 9350683..9350734 | 1..56 | 92 | | Minus |
