UFO04931.5prime Sequence
1159 bp (1039 high quality bases) assembled on 2009-06-30
> UFO04931.5prime
CAGTCGACATGGTGCTAATCAAGGAGTATCGCGTATGCATGCCGCTTACG
GTGGAGGAGTACAAGATCGGACAGCTTTATATGATAGCGCGCCACAGTCT
GGAGCAATCGGAGGAGGGCGAGGGCGTTGAGGTGGTGGAGAACAAGCCCT
GCGAGGATCCCGTTCACGGCAAGGGCCAGTACACGGAGAAGCACATTCAC
TTGTCCAGCCGACTGCCCTACTGGATCCAGGCCATTTGCCCCCGAGTCTT
CTATGTGATAGAGAAATCATGGAACTACTATCCGTACACGCTAACAGAAT
ACACGTGTTCCTTTATACCCAAACTAAATGTGCTCATCAAAACTAAGTAC
GAGGACAATAATGGCAGCACAGAAAACTGTCTGGATCTTACTGAAGATGA
GCTCAAAGTTCGAACTGTGGATCATTTGGACATAGCGTTCGATGAGGTCA
GTGCCAAGCATTATAAGAAGGAAGAAGATCCCAAGTTCTTCAAATCCGAA
AAGACAAACCGTGGTCCATTGATTGAAGGATGGCGGGAAACGGACAAGCC
CATTATGTGCTCCTACAAGGTGGTCCACGCCAGCTTTGAGGTATGGGGTC
TGCAGACCAAAGTGGAGGACTTCATTCAGCGCGGAATTCGGGAGATTCTA
CTACTGGGACACCGGCAGGCTTTCGCATGGGTGGACGAATGGCATGGCAT
GACCCTGGAGGATGTTCGCGCCTACGAGCGTCAAAAGCAGGCCGAGACCA
ATGAGAAGATTCACAACACAAGTGGTGGCGCAAATGCAGCGGCCAACGCC
AAAGAGGCAAATGATGGCGATATTGATGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGAGATCCTGGTTCATGACTAGTGCTTGATTCT
CACAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGG
AGTTCTGAGTTCATTACTGATCTATCACAGGAGTCCAAGCGAGCTCGATA
TTCAATTACGGCCCCGCCTGCCCCTTCACTCGCAGATACTGTTGATTCAT
ATAAGCATTCTGCGAACATGGAAGCATCAAACGGCATTGATTGACCTGAA
TCGGCAAGC
UFO04931.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 1382 | CG17818-RA | 109..927 | 9..827 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17696231..17696550 | 827..508 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 17697985..17698135 | 208..58 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 17696612..17696741 | 507..378 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 17697832..17697923 | 297..206 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 17696801..17696873 | 377..305 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 17698204..17698254 | 59..9 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:50:24 has no hits.
UFO04931.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:25 Download gff for
UFO04931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 101..926 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:47 Download gff for
UFO04931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 102..927 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:25 Download gff for
UFO04931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 102..927 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:25 Download gff for
UFO04931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17696231..17696550 | 508..827 | 100 | <- | Minus |
| 2R | 17696612..17696741 | 378..507 | 100 | <- | Minus |
| 2R | 17696801..17696872 | 306..377 | 100 | <- | Minus |
| 2R | 17697825..17697920 | 209..305 | 93 | <- | Minus |
| 2R | 17697985..17698133 | 60..208 | 100 | <- | Minus |
| 2R | 17698204..17698261 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:47 Download gff for
UFO04931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13583736..13584055 | 508..827 | 100 | <- | Minus |
| arm_2R | 13584117..13584246 | 378..507 | 100 | <- | Minus |
| arm_2R | 13584306..13584377 | 306..377 | 100 | <- | Minus |
| arm_2R | 13585330..13585425 | 209..305 | 93 | <- | Minus |
| arm_2R | 13585490..13585638 | 60..208 | 100 | <- | Minus |
| arm_2R | 13585709..13585766 | 1..59 | 93 | | Minus |
