UFO04935.5prime Sequence
1103 bp (968 high quality bases) assembled on 2009-06-30
> UFO04935.5prime
CAGTCGACATGTCGGATATCATGAACATCGACAGTATCATCTCGCGCCTG
CTGGAGGTGCGCGGTGCACGACCGGGAAAGAATGTTCAGCTATCAGAGAG
CGAGATCCGCAGCCTGTGCCTCAAGTCCCGCGAGATATTCCTGTCGCAGC
CCATACTCCTGGAGCTGGAGGCACCGCTGAAGATCTGCGGCGACATACAC
GGACAATATTATGACCTCTTGCGCCTGTTCGAATACGGCGGCTTTCCGCC
CGAGTCAAACTACCTGTTCCTGGGCGACTATGTCGATCGCGGCAAGCAAT
CCCTGGAGACGATATGCCTGCTGCTGGCCTACAAGATCAAGTACGCGGAG
AACTTCTTCTTGCTGCGCGGCAACCATGAGTGCGCCAGCATCAATCGCAT
CTACGGGTTCTATGACGAATGTAAACGTCGCTACACCATCAAGCTGTGGA
AAACTTTCACGGACTGCTTCAACTGCCTGCCGGTGGCCGCCATCGTGGAT
GAGAAGATCTTCTGCTGCCACGGTGGCCTGAGTCCAGATCTGTCGTCCAT
GGAGCAGATACGACGCATCATGCGTCCCACAGACGTGCCCGATCAGGGAC
TGCTGTGCGATCTGCTGTGGTCGGATCCGGATAAGGATACCATGGGCTGG
GGCGAGAATGATCGCGGCGTGAGCTTCACATTTGGAGCAGAGGTTGTGGG
TAAATTTTTACAGAAGCACGAATTTGACCTGATCTGTCGGGCTCATCACG
TAGTGGAGGACGGTTATGAGTTCTTCGCCAAACGTCAGCTGGTGACGCTC
TTCTCGGCGCCCAACTACTGCGGGGAATTCGACAACGCGGGTGCCATGAT
GTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGAAACCCGCCG
ACAGCGACGATTTGTTTATCCCAACTTTGGCAGCTCAGACGTCCTTTGAC
ACCGCCACGCGGAGCTACATAGACAGAAGCAGCTTTCTAGACCATTCGTT
TGGCGCGCCGGCCAGGTAAGTGGTCATATCATAATCATATTCATAATCTA
ATCACACTAGGCCTAAGGAGATCTGTCATGACTATGGCTGATTCCACAAT
AAA
UFO04935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 390..1350 | 9..967 | 4740 | 99.7 | Plus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 390..1350 | 9..967 | 4740 | 99.7 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 242..1124 | 21..903 | 2390 | 84.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424794..12425676 | 903..21 | 2390 | 84.7 | Minus |
| X | 23542271 | X | 15359463..15360298 | 883..48 | 1900 | 81.8 | Minus |
| 3R | 32079331 | 3R | 24518843..24519194 | 57..408 | 1760 | 100 | Plus |
| 3R | 32079331 | 3R | 24519595..24519883 | 406..694 | 1445 | 100 | Plus |
| X | 23542271 | X | 10406407..10406701 | 112..406 | 755 | 83.7 | Plus |
| 3R | 32079331 | 3R | 24519938..24520089 | 691..842 | 745 | 99.3 | Plus |
| 3R | 32079331 | 3R | 24520342..24520471 | 840..967 | 550 | 98.5 | Plus |
| X | 23542271 | X | 10406764..10407035 | 408..679 | 535 | 79.8 | Plus |
| Y | 3667352 | Y | 3539716..3540455 | 881..142 | 415 | 70.4 | Minus |
| X | 23542271 | X | 10407156..10407300 | 740..884 | 290 | 80 | Plus |
| 3R | 32079331 | 3R | 24518659..24518707 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:40 has no hits.
UFO04935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:45 Download gff for
UFO04935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 403..1363 | 9..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:15 Download gff for
UFO04935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1350 | 9..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:44 Download gff for
UFO04935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1350 | 9..967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:15:44 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:52:15 has no hits.
