UFO04937.5prime Sequence
1096 bp (980 high quality bases) assembled on 2009-06-30
> UFO04937.5prime
CAGTCGACATGATCTCTAACTTTGATTGCACCGATAATCAGGCCAGCAGC
AAGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACATCTTTGGATCGGA
GATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGGCGTCCAACATAT
TCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGTGATGCACCACGT
CGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTTTGGGGAGCCCAC
CCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCAGCATTCCCTTTG
GTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTGACCACCAATGGC
CACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTCGTCTTCGGTGTC
GTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGAGATCAGTCTTCC
GCAATATGAGCAAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGTCGTA
GCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGCACTCCGGT
GATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGGCCTGTGGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAATTTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGTAGC
CATCACAAACGGCATGATGAACCTGAATCGCAGCGCATCAGCACTTGTCG
CTTGCGTATATATTTGCCATGTGAAACGGGGCGAGAGTGTCAATATGCCA
CGGTTAATCAACTGTGACTCACCCAGGATGGCTGAACGAAACATATTCTC
AATAACTAAGAATAGGCCAGCTTACCGTACGCAACTCTGCGAATTT
UFO04937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jupiter-RA | 1535 | CG31363-RA | 160..750 | 9..599 | 2955 | 100 | Plus |
| Jupiter-RD | 1517 | CG31363-RD | 160..732 | 9..599 | 2675 | 97 | Plus |
| Jupiter-RC | 1581 | CG31363-RC | 268..796 | 53..599 | 2455 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11592367..11592625 | 444..186 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 11591171..11591307 | 599..463 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 11593631..11593770 | 188..49 | 685 | 99.3 | Minus |
| 3R | 32079331 | 3R | 11619703..11619747 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:43 has no hits.
UFO04937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:27 Download gff for
UFO04937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RA | 181..781 | 1..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:54 Download gff for
UFO04937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RA | 153..753 | 1..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:18 Download gff for
UFO04937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RA | 153..753 | 1..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:18 Download gff for
UFO04937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11591168..11591307 | 463..603 | 98 | <- | Minus |
| 3R | 11591995..11592012 | 445..462 | 100 | <- | Minus |
| 3R | 11592367..11592624 | 187..444 | 100 | <- | Minus |
| 3R | 11593633..11593766 | 53..186 | 100 | <- | Minus |
| 3R | 11619704..11619754 | 1..52 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:54 Download gff for
UFO04937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7416890..7417029 | 463..603 | 98 | <- | Minus |
| arm_3R | 7417717..7417734 | 445..462 | 100 | <- | Minus |
| arm_3R | 7418089..7418346 | 187..444 | 100 | <- | Minus |
| arm_3R | 7419355..7419488 | 53..186 | 100 | <- | Minus |
| arm_3R | 7445426..7445476 | 1..52 | 92 | | Minus |
