UFO04938.5prime Sequence
855 bp (854 high quality bases) assembled on 2009-06-22
> UFO04938.5prime
CAGTCGACATGGCCAGTAAAACCGCGCACTTCGTCCTGCCTAACACGCAG
CCCATTGCCGATTTGGACTGCAAGAGTGCCTTCGAGAATCTCACCGAGAA
GGAGAAGCTCTACGCCCACCACTTCAGCCAGGCCTCCTGGGACGGCGGAC
TCATTGCCTTGATCCAGTCCAGTCCGGAGGCGCCGCTCATCTTCTCCCTG
CTGCACCGCATTTTCCTAGCCGAAAAGATTCCTGTTCTTAGGGCGAAAGC
CCTGGAGGCGGGAGTGTCTGCTGATGATTTTACGGCCTTCCTAGTGTACG
CCTGCGGTGTGTTCGCCAACGCGGGCAACTACAAGGGTATGGGCGACAGC
AAGATCGTTCCCAATCTCTCAGAAAAGCAATTTGAGACTATAGTAAAGGC
ATCCGCTGCTTACAGCGATGAGCCGCGCGTAGGCAAGATCTTCGAGAAGG
TCAAGAATCTGATTTATGCGCTCGAGTCGCGTAACGAGATCCTGGGCTTT
GCTCCCGACGGAATCACCACCTACTGGTCGGATAACTGCACCAAGGAGGA
CTCCGAGATCGTGAACGCTTGGCTGACCTCAAAGCGTATCGAACCGTACA
TGTGCCGGACCTTCAAGATAGTTGAAAATGGTCAAACCGTCTACGATGTA
AAGCTGGGCTCCGTGGCGGAGTCCACGCAGGACGGCATCACACTTCCGCT
GGAAGAGTATAATGGCACAAGTTTAGGGTGACACGCGGTGATTACCAGAA
GCTGCTTCAGCGCGTCAACCAGCATCTGCTGCAGGCCCAGAAATACGCAG
CCAATGAAAACGAGTCCTAGATGATCGAGCACTATGTCGATCCTTTGAAC
AGGGC
UFO04938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DppIII-RC | 2613 | CG7415-RC | 331..1179 | 9..855 | 4180 | 99.6 | Plus |
| DppIII-RB | 2398 | CG7415-RB | 116..964 | 9..855 | 4180 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8345458..8346031 | 284..855 | 2755 | 99.5 | Plus |
| 3R | 32079331 | 3R | 8345124..8345400 | 9..285 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:52 has no hits.
UFO04938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:28 Download gff for
UFO04938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RC | 258..1114 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:50 Download gff for
UFO04938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 108..964 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:30 Download gff for
UFO04938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 108..964 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:30 Download gff for
UFO04938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8345116..8345399 | 1..284 | 98 | -> | Plus |
| 3R | 8345459..8346031 | 285..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:50 Download gff for
UFO04938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4170838..4171121 | 1..284 | 98 | -> | Plus |
| arm_3R | 4171181..4171753 | 285..855 | 99 | | Plus |
