UFO04939.5prime Sequence
1026 bp (904 high quality bases) assembled on 2009-06-30
> UFO04939.5prime
CAGTCGACATGTTTAGTCCCGAGTACGAGAAGCGCATCCTGAAGCACTAC
AGTCCTGTGGCACGGAATCTGTTCAACAACTTCGAGTCGTCCACTACGCC
CACATCTCTCGACCGCTTCATACCCTGCAGAGCGTACAACAACTGGCAGA
CGAACTTTGCGTCAATCAACAAGTCCAATGACAACTCGCCGCAGACGAGT
AAGAAGCAGCGGGACTGCGGGGAAACGGCACGCGATAGTCTCGCCTACTC
CTGCCTACTGAAGAACGAGCTCCTCGGATCGGCAATCGACGACGTGAAGA
CCGCCGGCGAGGAGCGGAATGAGAATGCCTACACGCCGGCCGCAAAGCGG
AGTCTCTTCAAGTACCAGTCACCCACCAAGCAGGACTACAATGGCGAGTG
TCCGTACTCGTTGTCACCCGTCAGCGCCAAAAGTCAGAAGCTGTTGCGAT
CGCCGCGCAAGGCTACGCGCAAAATCTCTCGCATTCCCTTCAAGGTGCTA
GACGCGCCCGAGTTGCAGGACGACTTCTATCTGAACCTGGTCGACTGGTC
GTCGCAGAACGTACTGGCTGTAGGCCTGGGCAGCTGTGTCTATCTGTGGA
GCGCGTGCACCAGTCAGGTTACCCGCCTGTGTGATCTCAGTCCGGATGCG
AATACGGTGACCTCGGTGTCGTGAAACGAGCGTGGCAACACCGTGGCCGT
GGGCACACATCACGGCTACGTGACCGTCTGGGATGTGGCGGCCAATAAGC
AGATCAACAAACTGAATGGCCATTCGGCGCGTGTGGCGCCTTGGCATGAA
CAGTGACATCCTGTCGAGCGGGTCGCGAGACCGTTGGATCATACAGCGGG
ATACGAGACGCCGCAACTGCAATCGGAGCGCAGATTGGCCCGGACATCGG
CAGGAGGTGTGCGGACTGAATGTCACCGGATATCATACCTGGCCAGGTGG
CGCACGATATCGGTTTATGTGGTGGATCAGCATCATGATCCCGTACAATC
AACACGGACATGCGCTGTAGCAATCG
UFO04939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rap-RA | 2610 | CG3000-RA | 471..1483 | 9..1008 | 4570 | 97.8 | Plus |
| rap-RB | 2516 | CG3000-RB | 377..1389 | 9..1008 | 4570 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4668516..4668822 | 920..616 | 1325 | 98.4 | Minus |
| X | 23542271 | X | 4674366..4674624 | 384..126 | 1295 | 100 | Minus |
| X | 23542271 | X | 4668902..4669141 | 619..380 | 1200 | 100 | Minus |
| X | 23542271 | X | 4676254..4676375 | 130..9 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:09 has no hits.
UFO04939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:45 Download gff for
UFO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 375..1288 | 9..920 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:12 Download gff for
UFO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 375..1288 | 9..920 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:33 Download gff for
UFO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 377..1290 | 9..920 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:33 Download gff for
UFO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4668516..4668820 | 618..920 | 98 | <- | Minus |
| X | 4668904..4669137 | 384..617 | 100 | <- | Minus |
| X | 4674367..4674619 | 131..383 | 100 | <- | Minus |
| X | 4676254..4676375 | 9..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:12 Download gff for
UFO04939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4562549..4562853 | 618..920 | 98 | <- | Minus |
| arm_X | 4562937..4563170 | 384..617 | 100 | <- | Minus |
| arm_X | 4568400..4568652 | 131..383 | 100 | <- | Minus |
| arm_X | 4570287..4570408 | 9..130 | 100 | | Minus |
