UFO04942.5prime Sequence
1129 bp (1019 high quality bases) assembled on 2009-06-30
> UFO04942.5prime
CAGTCGACATGTCCTGGCAAAGTGTTCCCCAGTATCCCCAATACCAAGAT
CCCAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCGCAGGGAGGATA
TGGTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGGACCGCCGCAAG
GCTACCCACCCTATGCACAAGGAGGTGCTCAACCCTATCCACAGCCCTAC
GGACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCGGGATTTATCCA
ACCACCACCATCTGCTGGCGGCTACGGAGCCTACGATGATCCGGAGAGCC
AGCCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTCGCGGATTCATA
CGTAAGGTGTACCTGATTCTAATGGGACAACTAATCGTCACTTTTGGAGC
TGTTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTTTGCCAGGAATA
ACATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAGTAACCATGCTG
TCTATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCGACGAACTTCAT
ATTCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCG
CAACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGGGCATAACAGCA
GCGGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACAAAGTACGACTT
TACTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGTGTTCCTGATCT
TCGGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAACACTGGTGTAC
GCCTCGATTGAGCGCTGCTCTTCTCCGTTTATCTCATCTACGACACACAG
TTAATGATGGGCGGCGAGCACAAATACTCTATCAGTCCCGAGGAGTACAT
CTTTGCGGCACTAAACCTCTACCTGACATCATCATATCTTCATGTACATT
CTGACTATATCGGCGCATCGCGCGACGCAAGCTTTCTAGACATTCGTTTG
GCGCGCGGCCCAGGTAGTGGTCATAATCATATCATAATCATAATCATAAT
CCACAACCTAGCTAGGGAGATCCTGGTCATGGACTTAGTGCTTGGATTCC
ACCAAATAAAACGCCCGGCGCAACCGAAC
UFO04942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-RE | 1742 | CG3798-RE | 207..1178 | 9..976 | 4760 | 99.6 | Plus |
Nmda1-RC | 1701 | CG3798-RC | 166..1137 | 9..976 | 4760 | 99.6 | Plus |
Nmda1-RD | 1800 | CG3798-RD | 265..1236 | 9..976 | 4760 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12878384..12878712 | 375..47 | 1645 | 100 | Minus |
2R | 25286936 | 2R | 12877658..12878016 | 976..622 | 1595 | 98.9 | Minus |
2R | 25286936 | 2R | 12878071..12878322 | 625..374 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 12875330..12875635 | 925..621 | 250 | 72.9 | Minus |
3R | 32079331 | 3R | 14153029..14153129 | 915..815 | 235 | 82.2 | Minus |
2R | 25286936 | 2R | 12879052..12879091 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:59 has no hits.
UFO04942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:50 Download gff for
UFO04942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RC | 182..1168 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:21 Download gff for
UFO04942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RD | 256..1242 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:56 Download gff for
UFO04942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RD | 256..1242 | 1..984 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:56 Download gff for
UFO04942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12879052..12879096 | 1..48 | 91 | | Minus |
2R | 12877658..12878014 | 624..976 | 98 | <- | Minus |
2R | 12878073..12878321 | 375..623 | 100 | <- | Minus |
2R | 12878385..12878710 | 49..374 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:21 Download gff for
UFO04942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8765163..8765519 | 624..976 | 98 | <- | Minus |
arm_2R | 8765578..8765826 | 375..623 | 100 | <- | Minus |
arm_2R | 8765890..8766215 | 49..374 | 100 | <- | Minus |
arm_2R | 8766557..8766601 | 1..48 | 91 | | Minus |