Clone UFO04942 Report

Search the DGRC for UFO04942

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:49
Well:42
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptNmda1-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04942.5prime Sequence

1129 bp (1019 high quality bases) assembled on 2009-06-30

> UFO04942.5prime
CAGTCGACATGTCCTGGCAAAGTGTTCCCCAGTATCCCCAATACCAAGAT
CCCAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCGCAGGGAGGATA
TGGTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGGACCGCCGCAAG
GCTACCCACCCTATGCACAAGGAGGTGCTCAACCCTATCCACAGCCCTAC
GGACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCGGGATTTATCCA
ACCACCACCATCTGCTGGCGGCTACGGAGCCTACGATGATCCGGAGAGCC
AGCCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTCGCGGATTCATA
CGTAAGGTGTACCTGATTCTAATGGGACAACTAATCGTCACTTTTGGAGC
TGTTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTTTGCCAGGAATA
ACATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAGTAACCATGCTG
TCTATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCGACGAACTTCAT
ATTCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCG
CAACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGGGCATAACAGCA
GCGGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACAAAGTACGACTT
TACTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGTGTTCCTGATCT
TCGGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAACACTGGTGTAC
GCCTCGATTGAGCGCTGCTCTTCTCCGTTTATCTCATCTACGACACACAG
TTAATGATGGGCGGCGAGCACAAATACTCTATCAGTCCCGAGGAGTACAT
CTTTGCGGCACTAAACCTCTACCTGACATCATCATATCTTCATGTACATT
CTGACTATATCGGCGCATCGCGCGACGCAAGCTTTCTAGACATTCGTTTG
GCGCGCGGCCCAGGTAGTGGTCATAATCATATCATAATCATAATCATAAT
CCACAACCTAGCTAGGGAGATCCTGGTCATGGACTTAGTGCTTGGATTCC
ACCAAATAAAACGCCCGGCGCAACCGAAC

UFO04942.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RE 1742 CG3798-RE 207..1178 9..976 4760 99.6 Plus
Nmda1-RC 1701 CG3798-RC 166..1137 9..976 4760 99.6 Plus
Nmda1-RD 1800 CG3798-RD 265..1236 9..976 4760 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12878384..12878712 375..47 1645 100 Minus
2R 25286936 2R 12877658..12878016 976..622 1595 98.9 Minus
2R 25286936 2R 12878071..12878322 625..374 1260 100 Minus
2R 25286936 2R 12875330..12875635 925..621 250 72.9 Minus
3R 32079331 3R 14153029..14153129 915..815 235 82.2 Minus
2R 25286936 2R 12879052..12879091 48..9 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:42:59 has no hits.

UFO04942.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:50 Download gff for UFO04942.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RC 182..1168 1..984 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:21 Download gff for UFO04942.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RD 256..1242 1..984 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:56 Download gff for UFO04942.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RD 256..1242 1..984 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:56 Download gff for UFO04942.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12879052..12879096 1..48 91   Minus
2R 12877658..12878014 624..976 98 <- Minus
2R 12878073..12878321 375..623 100 <- Minus
2R 12878385..12878710 49..374 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:21 Download gff for UFO04942.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8765163..8765519 624..976 98 <- Minus
arm_2R 8765578..8765826 375..623 100 <- Minus
arm_2R 8765890..8766215 49..374 100 <- Minus
arm_2R 8766557..8766601 1..48 91   Minus