UFO04943.5prime Sequence
1139 bp (1066 high quality bases) assembled on 2009-06-30
> UFO04943.5prime
CAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGGCCGTGGTG
GCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCTGAGATTAC
CAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCATGCGCAATC
AGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCATGGGCGCC
TACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAGCACTTCTT
CAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGTGGAGTACC
TGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGATCAATGTG
CCGGTAAGTCGACGACTCGCCGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTTGTATTCACTCCAG
AGCGATGAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACAGGTGAACA
CTATCCCATATCACCAGCTCCACGTCTTTCATGCCATACGAAATTCCGGA
TGAGCATCATCAGGCGGTCAAGAATGGGATAAGGCCGATAAACTGGGGCC
TAACTTTTCTTACGGCCTAAAGCCGTAATATCGAGCTGA
UFO04943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RE | 1197 | CG2216-RE | 107..469 | 9..371 | 1815 | 100 | Plus |
| Fer1HCH-RD | 1187 | CG2216-RD | 159..503 | 9..353 | 1725 | 100 | Plus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..543 | 9..353 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386301..30386596 | 371..76 | 1480 | 100 | Minus |
| 3R | 32079331 | 3R | 30387463..30387530 | 76..9 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:18:10 has no hits.
UFO04943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:51 Download gff for
UFO04943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 371..733 | 9..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:19 Download gff for
UFO04943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..469 | 9..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:23 Download gff for
UFO04943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..469 | 9..371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:23 Download gff for
UFO04943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30386301..30386596 | 76..371 | 100 | <- | Minus |
| 3R | 30387464..30387530 | 9..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:19 Download gff for
UFO04943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26212023..26212318 | 76..371 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 9..75 | 100 | | Minus |
