UFO04944.5prime Sequence
1112 bp (1006 high quality bases) assembled on 2009-06-30
> UFO04944.5prime
CAGTCGACATGGCAAGAATGCTGCTGAAATGGATTCGGAGTCCGATGACG
ATGCAGAAATGGAGAATGACAAATCAGTACAACCCCAGGATGAATACAAT
TCATAGTTGCGGTTGTATGGGCGTGCGCACCTGCTTGAGCTGCGAACAGG
ACTTTCAGGTAGCAAAGAGCTGCCTCGGCGAATCAGTGCTCTCTTTGATG
CCCTACGAAGTTCAACAACCGGGCAAGTACAACTTGGACTTGGTGGCCAG
CTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAATTTGCAA
CTTTTGAGGAAATGGTGCTGCGCATACCTTTGCCAAACCTCTGCCTAATA
GTTTTGTATGGACCAGGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAA
ACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC
GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCAGAGCG
ATGAAAACGTTCAGTTTGCTCATGAAAACGTGTACAGGGTGACACTATCC
ATATCACAGCTCACGTCTTCATGCATACGAAATCGGATGACCATCATCAG
CGGCAGATGTGAATAAAGTCCGATAACCTGGCCTATTTTCTTACGCTGAA
CGCCGTAATCAG
UFO04944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4036-RB | 950 | CG4036-RB | 579..775 | 170..366 | 790 | 93.4 | Plus |
| CG4036-RA | 1002 | CG4036-RA | 631..827 | 170..366 | 790 | 93.4 | Plus |
| CG4036-RA | 1002 | CG4036-RA | 70..152 | 86..168 | 295 | 90.4 | Plus |
| CG4036-RB | 950 | CG4036-RB | 20..100 | 88..168 | 285 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9789367..9789617 | 337..87 | 1255 | 100 | Minus |
| 2L | 23513712 | 2L | 9791527..9791694 | 170..337 | 705 | 94.6 | Plus |
| 2L | 23513712 | 2L | 9789790..9789870 | 89..9 | 405 | 100 | Minus |
| 2L | 23513712 | 2L | 9790966..9791048 | 86..168 | 295 | 90.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:28 has no hits.
UFO04944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:47 Download gff for
UFO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18854-RC | 561..942 | 1..377 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:16 Download gff for
UFO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 632..827 | 171..366 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:07 Download gff for
UFO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 632..827 | 171..366 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:07 Download gff for
UFO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9789276..9789306 | 338..368 | 100 | <- | Minus |
| 2L | 9789367..9789615 | 89..337 | 100 | <- | Minus |
| 2L | 9789791..9789878 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:16 Download gff for
UFO04944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9789276..9789306 | 338..368 | 100 | <- | Minus |
| arm_2L | 9789367..9789615 | 89..337 | 100 | <- | Minus |
| arm_2L | 9789791..9789878 | 1..88 | 95 | | Minus |
