UFO04946.5prime Sequence
1052 bp (982 high quality bases) assembled on 2009-06-30
> UFO04946.5prime
CAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGCTGGACAAG
GACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAAATCCTGCG
TAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTACTCGATGG
AGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACAAGGACACG
GTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTCAACGTGGA
GTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGACACCATGC
GCACCATGGAACTGATTTTGCGGCAGAAATTTGATTCCGATCGGTCCAAG
TACTTGCCGCCGATTAAACGCGGCGGATATATCGACATATATATGACTAG
CTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGTCTTCGAGG
CGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGACCCTGGGC
AACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCCGATTTGAT
TTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGAGGGCAAGG
AGATCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACGAGCTACTC
AAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAGCTTGTGAT
GCAAACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGTGCTGGAGA
AACGCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTGTGGAGTAC
TTGAAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTTTTTGGGGA
TCTTACGGACATACCCATAACCGATGCCCCGGAGGGCGAGACCTGGATTT
CATTCGTACATCTTCGAGCACTCTTCAGGTGCTGAACCCGACGAAGTATT
TGACTCATGCATGGTCCACTGCAAGTGCAGCTGCGTCTATTCGAGGAGCA
TTGATTGCTGCTCCAAGGTGAGTTCACCACACCAGCCTTGGTGCGTCGTC
AT
UFO04946.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-RD | 1983 | CG4300-RD | 78..1117 | 9..1030 | 4770 | 98.3 | Plus |
| CG4300-RA | 1983 | CG4300-RA | 78..1117 | 9..1030 | 4770 | 98.3 | Plus |
| CG4300-RC | 1980 | CG4300-RC | 468..1114 | 402..1030 | 2805 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12272645..12273041 | 923..529 | 1885 | 99.5 | Minus |
| 3L | 28110227 | 3L | 12276890..12277174 | 293..9 | 1425 | 100 | Minus |
| 3L | 28110227 | 3L | 12273498..12273623 | 528..403 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 12275076..12275187 | 405..294 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:59 has no hits.
UFO04946.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:26 Download gff for
UFO04946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 86..1122 | 1..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:26 Download gff for
UFO04946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 71..1107 | 1..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:08 Download gff for
UFO04946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 71..1107 | 1..1021 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:08 Download gff for
UFO04946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12272558..12273041 | 529..1000 | 97 | <- | Minus |
| 3L | 12273498..12273620 | 406..528 | 100 | <- | Minus |
| 3L | 12275076..12275187 | 294..405 | 100 | <- | Minus |
| 3L | 12276890..12277178 | 1..293 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:26 Download gff for
UFO04946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12265658..12266141 | 529..1000 | 97 | <- | Minus |
| arm_3L | 12266598..12266720 | 406..528 | 100 | <- | Minus |
| arm_3L | 12268176..12268287 | 294..405 | 100 | <- | Minus |
| arm_3L | 12269990..12270278 | 1..293 | 98 | | Minus |
