Clone UFO04947 Report

Search the DGRC for UFO04947

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:49
Well:47
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptSpn77Bc-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04947.5prime Sequence

1023 bp (845 high quality bases) assembled on 2009-06-30

> UFO04947.5prime
CAGTCGACATGAAGCTCGGATTTCTGGGCCTTTTTGGCATGGTGCTCAGT
TTGCGGGCCCATATATGTGCAAATTCTGTTGATACGAAGAGTCTATTACA
AAAAATGACGGACGCAAGGCTTCAATTTGCCCTCAACCTGCTGCAAATGG
AATCCACGCATTTAAACCTGGAAAACTTTGCGATGACGCCATTTTCCACG
TGGTCACTTATGATCATGTTCTACGAGGGAGCAGAGGGGACTACCTTGAA
GCAGATACGTGATGTCCTGGCGATCTATGTCGATTATCCAACACTGCGCA
GGTGGTACGAGGATGTCCGAGCTTATCACTATTTAAATTCGGAAAACACA
AAACTGTTTTCGCTGCGTTACGCTTACTACGACGATGTAGGAGATTTAGA
ACTCGTGAAAGGGTACAACAGTGTAGTCCTAGAAGGAGTAGGAGAAGGAA
ATGTGGTTCTTCGAGAGGGTCGGCCAAGGGGTGTGGACTTCGACCAGGGG
GCGAGTATAATTATCAACGACGATATCGACAAAGCCTCTCATGCGAAAAT
CTTCAGTTCTTATAGCCGTCGTTCGTTCAATAGTACAGTAACTGTGCTGG
GGATTACTGTTAGCTACTTTAAGGCCAAATGGAAGTATCCATTCGATAAG
TCCCAGACGAAAGTGGAACAGTTTTACAACGCCGGCGGCTCGCCGGCAGG
TAAGGTGGAGATGATGGTGCAACGGGAAGTATGCCTACGTCAATTATGTA
AGGGTCTGCAAGCGGATGTCCTGCAGCTACCTTTTGGGGACATGAGCTAG
TAATGATCGTCATACTGCCGAGCCTTCCCAGAGAGTAAGCCTGGTGCCTC
AAACAATTGAGACCCTGGGACTACATCGCCTCCTTGAGACTCGAGCCTCC
AGATGATCTGATGTAGAGTCAGCTCCCAGTTCGATACCGCGATCCGTACT
TTCACCCCGAAGATCCGTATATGAGCTGACTACCGATTCTGGAGATGATC
CGCAAATTCTAAGTCCATGCTGA

UFO04947.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
Spn77Bc-RB 1430 CG6289-RB 40..1072 9..1023 4365 96.3 Plus
Spn77Bc-RA 1440 CG6289-RA 50..1082 9..1023 4365 96.3 Plus
Spn77Bb-RA 1161 CG6663-RA 74..852 210..974 3015 94 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20342738..20343060 9..331 1600 99.7 Plus
3L 28110227 3L 20343128..20343431 332..635 1520 100 Plus
3L 28110227 3L 20321269..20321572 332..635 1490 99.3 Plus
3L 28110227 3L 20343497..20343756 634..888 930 95.8 Plus
3L 28110227 3L 20321638..20321898 634..889 800 92.4 Plus
3L 28110227 3L 20321080..20321201 210..331 445 91 Plus
3L 28110227 3L 20321041..20321080 9..48 185 97.5 Plus
Blast to na_te.dros performed on 2014-11-28 20:01:17 has no hits.

UFO04947.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:46 Download gff for UFO04947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6289-RA 33..1025 9..985 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:22 Download gff for UFO04947.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn77Bc-RA 50..1042 9..985 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:52 Download gff for UFO04947.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn77Bc-RA 50..1042 9..985 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:52 Download gff for UFO04947.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20343499..20343856 636..980 92 -> Plus
3L 20343128..20343431 332..635 100 -> Plus
3L 20342738..20343060 9..331 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:22 Download gff for UFO04947.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20335838..20336160 9..331 99 -> Plus
arm_3L 20336228..20336531 332..635 100 -> Plus
arm_3L 20336599..20336956 636..980 92 -> Plus