UFO04947.5prime Sequence
1023 bp (845 high quality bases) assembled on 2009-06-30
> UFO04947.5prime
CAGTCGACATGAAGCTCGGATTTCTGGGCCTTTTTGGCATGGTGCTCAGT
TTGCGGGCCCATATATGTGCAAATTCTGTTGATACGAAGAGTCTATTACA
AAAAATGACGGACGCAAGGCTTCAATTTGCCCTCAACCTGCTGCAAATGG
AATCCACGCATTTAAACCTGGAAAACTTTGCGATGACGCCATTTTCCACG
TGGTCACTTATGATCATGTTCTACGAGGGAGCAGAGGGGACTACCTTGAA
GCAGATACGTGATGTCCTGGCGATCTATGTCGATTATCCAACACTGCGCA
GGTGGTACGAGGATGTCCGAGCTTATCACTATTTAAATTCGGAAAACACA
AAACTGTTTTCGCTGCGTTACGCTTACTACGACGATGTAGGAGATTTAGA
ACTCGTGAAAGGGTACAACAGTGTAGTCCTAGAAGGAGTAGGAGAAGGAA
ATGTGGTTCTTCGAGAGGGTCGGCCAAGGGGTGTGGACTTCGACCAGGGG
GCGAGTATAATTATCAACGACGATATCGACAAAGCCTCTCATGCGAAAAT
CTTCAGTTCTTATAGCCGTCGTTCGTTCAATAGTACAGTAACTGTGCTGG
GGATTACTGTTAGCTACTTTAAGGCCAAATGGAAGTATCCATTCGATAAG
TCCCAGACGAAAGTGGAACAGTTTTACAACGCCGGCGGCTCGCCGGCAGG
TAAGGTGGAGATGATGGTGCAACGGGAAGTATGCCTACGTCAATTATGTA
AGGGTCTGCAAGCGGATGTCCTGCAGCTACCTTTTGGGGACATGAGCTAG
TAATGATCGTCATACTGCCGAGCCTTCCCAGAGAGTAAGCCTGGTGCCTC
AAACAATTGAGACCCTGGGACTACATCGCCTCCTTGAGACTCGAGCCTCC
AGATGATCTGATGTAGAGTCAGCTCCCAGTTCGATACCGCGATCCGTACT
TTCACCCCGAAGATCCGTATATGAGCTGACTACCGATTCTGGAGATGATC
CGCAAATTCTAAGTCCATGCTGA
UFO04947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn77Bc-RB | 1430 | CG6289-RB | 40..1072 | 9..1023 | 4365 | 96.3 | Plus |
Spn77Bc-RA | 1440 | CG6289-RA | 50..1082 | 9..1023 | 4365 | 96.3 | Plus |
Spn77Bb-RA | 1161 | CG6663-RA | 74..852 | 210..974 | 3015 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20342738..20343060 | 9..331 | 1600 | 99.7 | Plus |
3L | 28110227 | 3L | 20343128..20343431 | 332..635 | 1520 | 100 | Plus |
3L | 28110227 | 3L | 20321269..20321572 | 332..635 | 1490 | 99.3 | Plus |
3L | 28110227 | 3L | 20343497..20343756 | 634..888 | 930 | 95.8 | Plus |
3L | 28110227 | 3L | 20321638..20321898 | 634..889 | 800 | 92.4 | Plus |
3L | 28110227 | 3L | 20321080..20321201 | 210..331 | 445 | 91 | Plus |
3L | 28110227 | 3L | 20321041..20321080 | 9..48 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:17 has no hits.
UFO04947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:46 Download gff for
UFO04947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6289-RA | 33..1025 | 9..985 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:22 Download gff for
UFO04947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bc-RA | 50..1042 | 9..985 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:52 Download gff for
UFO04947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn77Bc-RA | 50..1042 | 9..985 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:52 Download gff for
UFO04947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20343499..20343856 | 636..980 | 92 | -> | Plus |
3L | 20343128..20343431 | 332..635 | 100 | -> | Plus |
3L | 20342738..20343060 | 9..331 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:22 Download gff for
UFO04947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20335838..20336160 | 9..331 | 99 | -> | Plus |
arm_3L | 20336228..20336531 | 332..635 | 100 | -> | Plus |
arm_3L | 20336599..20336956 | 636..980 | 92 | -> | Plus |