UFO04948.5prime Sequence
1122 bp (993 high quality bases) assembled on 2009-06-30
> UFO04948.5prime
CAGTCGACATGTTGTTCTCACTGGGCAGCGGCAAGGCCAACATGGATCCA
GCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTGTGCGGCCT
GACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAGCACTTCGGCGGTC
TGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATCCGCTGTTC
ATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTGATCTATCG
TGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCACGCCGGCA
TCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGACGGTCTTC
GATTCCCACAACTTGGCCAATCCGCCCATTCCCAACATGTACTCCCTGCA
CTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTCGCTGCAGTATGTGG
CCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAGGGAGAACTACAGGATC
GCCATGATGCCGCTGCACATCTACTTCGGACTCTTTGGATTCGTTCTGGC
TATTGCTAGTGCCCTGATGGGCATAACCGAGAAGGCCATCTTCGCCATCA
AAACTCCGGCTTACTCCACTCTTCCACCGGCTGGTGTGTTGGCCAATGTG
ATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGGTTGTCTACCTAGCCAC
TGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAGGACACGGCTCTGCTGA
ACTCCAGTTCTGTCAACGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGGTCATGACTAGTGGCTTGGGATTCTCAC
CATAAAAACGCCCGGCGGCAACCGAGCGTTCTTGAACAAATCCAGATGGG
AGTTCTGAAGGTCATTACTGGGATGCTATCACCAGGGAGTCCAAGCGAGC
TCGATAATCAAATAACGCCCCCGCCCTGCCACTCATCGCAGTACTTGTTG
TAATTCATTAAGCATTCTGCGACATGGAAGCCATCACAAACGGCATGATG
ACTTGATCCCAGCGGCATTCAG
UFO04948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1275-RC | 1300 | CG1275-RC | 191..953 | 8..770 | 3815 | 100 | Plus |
| CG1275-RA | 1574 | CG1275-RA | 472..1218 | 24..770 | 3735 | 100 | Plus |
| CG1275-RB | 1698 | CG1275-RB | 596..1342 | 24..770 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2253329..2253692 | 598..235 | 1820 | 100 | Minus |
| 3L | 28110227 | 3L | 2253777..2253987 | 234..24 | 1055 | 100 | Minus |
| 3L | 28110227 | 3L | 2253100..2253271 | 770..599 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:19 has no hits.
UFO04948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:48 Download gff for
UFO04948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RC | 130..903 | 1..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:01 Download gff for
UFO04948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RC | 184..957 | 1..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:28 Download gff for
UFO04948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RC | 184..957 | 1..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:28 Download gff for
UFO04948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2253096..2253271 | 599..775 | 98 | <- | Minus |
| 3L | 2253329..2253692 | 235..598 | 100 | <- | Minus |
| 3L | 2253777..2253986 | 25..234 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:01 Download gff for
UFO04948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2253096..2253271 | 599..775 | 98 | <- | Minus |
| arm_3L | 2253329..2253692 | 235..598 | 100 | <- | Minus |
| arm_3L | 2253777..2253986 | 25..234 | 100 | <- | Minus |
