UFO04950.5prime Sequence
1108 bp (997 high quality bases) assembled on 2009-06-30
> UFO04950.5prime
CAGTCGACATGAAATTCACTATTGCCATCGCCTTCACCTGTATCCTTGCC
TGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAGGTGCTGCG
CTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGTGGAGACGA
GCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACGTGGGCACC
GATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTCGGTGACGA
TGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGGCTTCCAGC
CCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACG
TTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAA
CATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAAC
ACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGT
ATTCACTCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAAACGGTGTA
CAGGTGACACTATCCCATATCACAGCTCACGTCTTTCATGCATACGAAAT
CGATGAGCATCATCAGCCGGCAGATGTGAATAAGCGATAACTGTGCTATT
TTCTTTACGTCTTTAAGCGTATATCAGCTTGACCGACTGTTAGTCTGGAC
CTGACTGA
UFO04950.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ad-RB | 616 | CG6955-RB | 75..398 | 9..332 | 1620 | 100 | Plus |
| Lcp65Ad-RA | 521 | CG6955-RA | 75..398 | 9..332 | 1620 | 100 | Plus |
| Lcp65Ac-RA | 505 | CG6956-RA | 191..402 | 110..321 | 400 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6143691..6143883 | 140..332 | 965 | 100 | Plus |
| 3L | 28110227 | 3L | 6143469..6143599 | 9..139 | 655 | 100 | Plus |
| 3L | 28110227 | 3L | 6145111..6145290 | 142..321 | 330 | 78.9 | Plus |
| 3L | 28110227 | 3L | 6147581..6147652 | 320..249 | 195 | 84.7 | Minus |
| 3L | 28110227 | 3L | 6150452..6150523 | 320..249 | 195 | 84.7 | Minus |
| 3L | 28110227 | 3L | 6152286..6152359 | 321..248 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:22 has no hits.
UFO04950.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:51 Download gff for
UFO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ad-RA | 53..390 | 1..336 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:20 Download gff for
UFO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ad-RA | 65..402 | 1..336 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:41 Download gff for
UFO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ad-RA | 65..402 | 1..336 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:41 Download gff for
UFO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6143459..6143599 | 1..139 | 97 | -> | Plus |
| 3L | 6143691..6143883 | 140..332 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:20 Download gff for
UFO04950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6136791..6136983 | 140..332 | 100 | == | Plus |
| arm_3L | 6136559..6136699 | 1..139 | 97 | -> | Plus |
