UFO04951.5prime Sequence
1141 bp (1028 high quality bases) assembled on 2009-06-30
> UFO04951.5prime
CAGTCGACATGATTACGCCGAATCCGTATTCCTTTAGTGGCAACATTTCC
ATCAGCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAGCATCCTAGA
GGACAACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGACAATTCCGC
GGCGACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTCGATTTGAGT
CACAATGATTTCCGAAACTTGAGATTTCTCTCCTTTTTCGAGGATCTGGA
CACTTTAATCCTGGACCGCAACGTAAACCTGGACATAAACACTTTTCCTT
ATTTGCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGATATAGCAAAT
ATAACCGATTGGATACACCGCATCGAACGGCACTGTCCTGCGCTGGATCA
GCTCTCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCGGGGGCCAAG
GACCCCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAATATCTCGAT
GGACTTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTCTTCCTCACA
AGGACAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTCCACTCGCAT
CCGCATTCACTTTCAAGGACATCATCCGTCCAAAGTATTCCAGAAAATCG
CACAGCGGACGGATGTTTGGCAACGGCTCCTCCACAAACGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAG
TCCAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATCATTAGCATTCTGCGAAATGGAGGCATCACAAACGGCATG
ATGACTGATCGCAGCGGCATCAGCACCTTGTCGCTTGCTATAATATTTGC
CCATGTGAACGGGGGCGAAAATGTCATATTGCCGTTAATCAACTGGCGAC
TCACCAGGATGCTGACGAAACTATTCCATACTAGGAATGCC
UFO04951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31274-RB | 1399 | CG31274-RB | 281..961 | 9..689 | 3405 | 100 | Plus |
| MESK4-RB | 1488 | CG31447-RB | 271..951 | 9..689 | 3405 | 100 | Plus |
| MESK4-RA | 1390 | CG31447-RA | 271..951 | 9..689 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16989518..16989882 | 325..689 | 1825 | 100 | Plus |
| 3R | 32079331 | 3R | 16993730..16994094 | 325..689 | 1825 | 100 | Plus |
| 3R | 32079331 | 3R | 16989138..16989455 | 9..326 | 1590 | 100 | Plus |
| 3R | 32079331 | 3R | 16993350..16993667 | 9..326 | 1590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:45 has no hits.
UFO04951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:52 Download gff for
UFO04951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31274-RB | 160..845 | 9..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:10 Download gff for
UFO04951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK4-RB | 271..956 | 9..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:00 Download gff for
UFO04951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK4-RA | 271..956 | 9..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:00 Download gff for
UFO04951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16989138..16989454 | 9..325 | 100 | -> | Plus |
| 3R | 16989519..16989887 | 326..694 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:10 Download gff for
UFO04951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12814860..12815176 | 9..325 | 100 | -> | Plus |
| arm_3R | 12815241..12815609 | 326..694 | 99 | == | Plus |
