UFO04953.5prime Sequence
1135 bp (1042 high quality bases) assembled on 2009-06-30
> UFO04953.5prime
CAGTCGACATGTCCGCGTCAGTAAGAAATACAGTCACTAGCCAAGAAAAT
GGGAGTATCTTTAAACGGTCCAGTAACTTAGACAACGAACTCAAAAAGAA
GTCCGTGGTGGTTAATCAGACACAAGCCGAAGAGTCTAAGGCTAAGAAGA
AAGATACTACGCACTATTACAGTGTGGAAACACTTGCCGACCTGCAGTAT
CGATCTCAGATAAAGGTTTTGGAAAAGATCTATGGCGAGGAGGTTGATAT
GACACCTAAGTCGATCCAAGATGACACCTATGTGGAGCAGTTCATGAAGT
ACAACCTAAATGTCATGCACCAAATGACTAACTTCACTACAATGGTAGCG
AAGAGCACGACCAGATCCCGCACGCGGTCTAGTGTTCGGGCCGGAATAGG
CGGCAATAAGCAGTCCATTGACGACCTGATGAACGGGATACTTTATGAAA
CTATTAACTGGGAACCGTACAGCACTGTTGAGGCTCTCGAAGAGGCGTAC
GAGCCAAAGCCGTATACCAAGTCCTTTTTAAAGATCACCTTACGCAAGTC
TGACTTCTTCGAAATTCACAGCCAGACGCAGACGACGGTGGCCAAGGGAT
CGCCCGAGGGCGACGATGCGGAGCGAGACAACCGAAACTACGAGTATCTG
ACAATAGGGAAAGGCAAAATTCGCCGGCGCTCAGACAATGACGCTCAGAC
AGATACTCTGCTCTTCACCACTCGGGCAGTCAACACCATCCTCATAACCA
AGGCCACCGTCAGCTCTTACGTTTCCAACTTTGAGATGTACGACACGCTG
AACAATATCACCAAGGAGTTCGCAACAGCCACTATGAGTTCGGTAAAGGA
CCTGACCTCGGCTCTAGCGCAGACGGAGGATGCGGATACCTTTGAGGACG
ACGAGGCCGTTGCCGAAAAGACAGGTCAGCAGCCAGATAGAGCGCCTGTT
CCGAGCCCCGAGTTTCGCAACGCATCATGTACATGGGCCGCACGCTCTCG
AGCACACAAACGAGGCGGGTTACAACGCTTCCGTACTTGACAGGTGGAAC
GCTGGAAACGCGGAGAGCCGATACGTCTACTCGATTAACCTGCCTCTTCC
GCTTGTTACGGATCCAGCAAGACGACGCAGGCCGT
UFO04953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RA | 2616 | CG7051-RA | 192..1331 | 8..1135 | 5145 | 97.7 | Plus |
| Dic61B-RB | 2642 | CG7051-RB | 276..1357 | 66..1135 | 4855 | 97.6 | Plus |
| Dic61B-RB | 2642 | CG7051-RB | 192..249 | 8..65 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 151127..151791 | 1093..437 | 2730 | 97.1 | Minus |
| 3L | 28110227 | 3L | 151848..152071 | 437..214 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 152121..152272 | 217..66 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 152341..152398 | 65..8 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:17:13 has no hits.
UFO04953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:53 Download gff for
UFO04953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-RA | 187..1292 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:34 Download gff for
UFO04953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 187..1292 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:52 Download gff for
UFO04953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 187..1292 | 1..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:52 Download gff for
UFO04953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 151120..151790 | 438..1101 | 97 | <- | Minus |
| 3L | 151848..152069 | 216..437 | 100 | <- | Minus |
| 3L | 152123..152272 | 66..215 | 100 | <- | Minus |
| 3L | 152341..152401 | 1..65 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:34 Download gff for
UFO04953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 151120..151790 | 438..1101 | 97 | <- | Minus |
| arm_3L | 151848..152069 | 216..437 | 100 | <- | Minus |
| arm_3L | 152123..152272 | 66..215 | 100 | <- | Minus |
| arm_3L | 152341..152401 | 1..65 | 93 | | Minus |
