UFO04954.5prime Sequence
1118 bp (1006 high quality bases) assembled on 2009-06-30
> UFO04954.5prime
CAGTCGACATGTCCGACTACTTCGAGGAACTGGGTCATGAACCCACTGGA
CCACTGGGCGCAAACGATTTGGCCAGAAATCTAAAGCGCCTTCAGGTTTT
GGCCATCATGAATGGCATCGATATGGAGATCGAGGTGCCAGAGGCCTCCA
AGCGAGCCATTCTGGAGCTACCAGTTCATGAAATCGTCAAATCGGACGAG
GGCGGCGATTTGGAGTGCTCTGTGTGCAAGGAGCCAGCTGAAGAGGGCCA
GAAGTACAGGATCCTTCCATGCAAGCACGAGTTCCACGAGGAGTGCATCC
TGCTCTGGCTGAAGAAGACGAATTCCTGTCCTCTGTGTCGCTATGAACTG
GAAACTGATGATCCTGTTTACGAGGAGTTGCGCAGGTTTAGGCAGGATGA
AGCTAACCGACGGGAGCGGGAGAACACTCTTTTGGATTCCATGTTCGGCG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT
TGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAACATATTTCTCATAAACCCTTTAGGAAATAGCCAGG
TTTTCACCGTACACGCCACATCTGCGAATATATGTGTAGAACTGCGAAAT
CGTCGTGTATCACTCGAGCGATGAACGTTTCAGTTGCTCATGGAAACGGG
TACAGGGTGACCTATCCATTCACAGCTCACGTCTTCATGCATCCGATCGA
TGACATCCAAGCGGCAAG
UFO04954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7694-RC | 631 | CG7694-RC | 116..557 | 8..449 | 2210 | 100 | Plus |
| CG7694-RB | 640 | CG7694-RB | 125..566 | 8..449 | 2210 | 100 | Plus |
| CG7694-RA | 970 | CG7694-RA | 455..896 | 8..449 | 2210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18590118..18590427 | 8..317 | 1550 | 100 | Plus |
| 3R | 32079331 | 3R | 18590519..18590652 | 316..449 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:54:15 has no hits.
UFO04954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:00 Download gff for
UFO04954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7694-RA | 445..898 | 1..457 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:09 Download gff for
UFO04954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7694-RA | 445..898 | 1..457 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:19 Download gff for
UFO04954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7694-RA | 449..902 | 1..457 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:19 Download gff for
UFO04954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18590114..18590427 | 1..317 | 99 | -> | Plus |
| 3R | 18590521..18590652 | 318..449 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:09 Download gff for
UFO04954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14415836..14416149 | 1..317 | 99 | -> | Plus |
| arm_3R | 14416243..14416374 | 318..449 | 100 | == | Plus |
