UFO04955.5prime Sequence
1128 bp (1020 high quality bases) assembled on 2009-06-30
> UFO04955.5prime
CAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGATTTTGGCC
CTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAAGATGAGCG
TATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGCCAAGATCG
CCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAAGTCTCTCC
ACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATCTCCATCGA
CGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATTCCTGCTAA
CCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACAAGGTCACA
CTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGCGGAAAGGA
TCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACAGGTGAAGA
AGCTCACAATTTCTACCTTTGCGAACTGGAAATTAGCAATATCTTTGTTC
TGGACTTCTATGGAGGTCCTCATAAAGGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAA
TCAAACTGTGAAACTCCACCCAGGATGCTGAACGAAAAACATATCTCATA
ACCCTTAGGAATAGCAGCTTCACCGTACACGCCACATCTTGCATATATGT
GTAGAACTGCGAATCGTCTGCATTCACTCCGAGCGATGAATCGTCAAGTT
GCTCTATGAACGGTTAACAGGGTGAAAC
UFO04955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CREG-RC | 823 | CG5413-RC | 50..569 | 8..527 | 2600 | 100 | Plus |
| CREG-RD | 962 | CG5413-RD | 107..551 | 8..452 | 2225 | 100 | Plus |
| CREG-RB | 967 | CG5413-RB | 112..556 | 8..452 | 2225 | 100 | Plus |
| CREG-RD | 962 | CG5413-RD | 631..708 | 450..527 | 390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17393816..17394260 | 452..8 | 2225 | 100 | Minus |
| 3R | 32079331 | 3R | 17393526..17393602 | 527..451 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:30:13 has no hits.
UFO04955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:01 Download gff for
UFO04955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CREG-RC | 14..547 | 1..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:11 Download gff for
UFO04955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CREG-RC | 41..574 | 1..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:00 Download gff for
UFO04955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CREG-RC | 41..574 | 1..533 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:00 Download gff for
UFO04955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17393816..17394269 | 1..452 | 99 | | Minus |
| 3R | 17393526..17393600 | 453..527 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:11 Download gff for
UFO04955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13219248..13219322 | 453..527 | 100 | <- | Minus |
| arm_3R | 13219538..13219991 | 1..452 | 99 | | Minus |
