UFO04956.5prime Sequence
1009 bp (972 high quality bases) assembled on 2009-06-30
> UFO04956.5prime
CAGTCGACATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGACCCCCTGGT
TGCGGTAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGCCAGGCGAA
CTTCATCTCAGTCAAGGGTCCCGAACTGCTGACCATGTGGTTCGGCGAGT
CTGAGGCCAACGTGCGCGACATCTTCGATAAGGCCCGCTCGGCGGCTCCT
TGTGTGCTCTTCTTCGACGAGCTGGACTCGATCGCCAAAGCCCGTGGCGG
TAATGTCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAATCAGATCC
TTACCGAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCATCATCGGA
GCCACCAATCGCCCGGACATTATCGATCCGGCCATCCTCCGTCCGGGCCG
TCTGGATCAGTTGATCTATATTCCGCTGCCCGACGACAAATCGCGTGAGG
CTATCCTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGGAAGTAGAC
CTTACCTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCCGATCTGAC
CGAGATCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGCCATCGAGG
CTGAAATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACTCCGCGATG
GACATGGACGAGGACGATCCAGTGCCGGAGATTACTAGCGCCCACTTCGA
GGAGGCCATGAAAGTTCGCTCGCCGTTCGGTGTCCGATAATGACATCAAG
GAAGTACGAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGATTCGGAC
AGAACTTCAGATTCCCCGGTCAACCGGCAACACCTCAGATCTGGTAACAA
CTTGCCAGTTAACTCGCCCGGCGACACGGCGACGATGATCTTTACAGTGC
AGCTTTCTAGACAATTCGTTTGGCGCGCGGGCCCAGTTAGTGATCATAGT
CATAATCTTATCGTAATCATATCCACACTAGCCTATGAGCATCTTGGTCA
TGAACTAGG
UFO04956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RD | 3125 | CG2331-RD | 1749..2651 | 8..910 | 4350 | 99.1 | Plus |
| TER94-RC | 3058 | CG2331-RC | 1682..2584 | 8..910 | 4350 | 99.1 | Plus |
| TER94-RA | 3016 | CG2331-RA | 1640..2542 | 8..910 | 4350 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9992051..9992696 | 8..653 | 3230 | 100 | Plus |
| 2R | 25286936 | 2R | 9992763..9992917 | 654..810 | 685 | 98.7 | Plus |
| 2R | 25286936 | 2R | 9992981..9993074 | 808..898 | 320 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:51:27 has no hits.
UFO04956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:02 Download gff for
UFO04956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RC | 1579..2489 | 1..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:26 Download gff for
UFO04956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 1632..2542 | 1..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:59 Download gff for
UFO04956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 1632..2542 | 1..910 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:59 Download gff for
UFO04956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9992043..9992696 | 1..653 | 99 | -> | Plus |
| 2R | 9992763..9992917 | 654..810 | 98 | -> | Plus |
| 2R | 9992984..9993074 | 811..898 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:26 Download gff for
UFO04956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5879548..5880201 | 1..653 | 99 | -> | Plus |
| arm_2R | 5880268..5880422 | 654..810 | 98 | -> | Plus |
| arm_2R | 5880489..5880579 | 811..898 | 96 | == | Plus |
