UFO04958.5prime Sequence
1102 bp (1013 high quality bases) assembled on 2009-06-30
> UFO04958.5prime
CAGTCGACATGAAGACAGGCACTCGAATGGACGCTTTCCACACGGCGCTG
CACTTAATCACAATCGCAGCTCTGACGACGCACGCGGCGCAGATTCCAAC
GGCAATGAAAGATGCCCAGAGCTCGCTGAGCGATGCGATTGCGGCGGCGG
AGGCGGAGGTGGCCTCCACCTCTAAGCCGGCGGTGGAGCCGAGTGTGCGG
ATCAAGTGCCTCTCCGGATCGATGCTGATCACCATTAAAGACGCTCCTCC
GAACCACGAAACGGGCCTGTTCAGCGGCATGATCTACCCGAAAGGCCTGT
CCAAGAACTCCACCTGCTTGAGCGAGTACAGAGATCATGTGGGCTCCCTG
CGATATAAGCTGCCCCTGAGATCTTGCAACACGATGCCGAAGGAAACGGA
TGACGGTGGCATTGAGTTCTTCAACACCATCGTGCTGCAGCCCCACCTAA
AGCTCATCACGGACCTGGGACGTGGCTACCACGTCCGCTGTGCGTACAAG
AGTCGGGACGCAGCCATGAAGCCCAAAAAGTACCTGCGCAAGCACGCCCA
GAAGCCACAGGCCTTCCGCAGCGATGATCGGCGGGAGTACGGACGATCGC
TGGACAAGCAGCAGGACGACGACCTGGACGAGGAGGATGTCTACGATGCG
AATGCCCCGACGCAGGAGGAGGACGTGACCAACAACGAGATCCCCATGCC
AGGCTGCCACATGAAGATCTACAACGACGAGCACAAAATTGCCGACGATG
TGAAGATCGGTGATCCTCTGACCATTGTCATCAGCATCGATAAGCAGAAA
GTTTACGGACTCCATGTCACGGACTGCATAGTTCGCGATGGTCTGGGCTG
GGGAGAGCAGCGACTGGTGGGCGAAGATGGCTGCCCCATGGACAACGAGA
TCATGGGTCAGTTCAACTACACCCAAGACCGATTGGCAGCCACGTGACCT
TTCCGCGCACAAGTTCCCCTACACCACCTCCGTGTACTACCAGTGCAACG
TGCGACTGTGCGCCTGGAGGACCCACCTGCAGGAGCTCCCAGTGCAGCGG
CAGAGCCAAGCGCAGCGCGCGGAAGCAAGAAGAAGACGTTGCTGCACCAT
TG
UFO04958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pio-RE | 2374 | CG3541-RE | 88..1153 | 8..1063 | 5075 | 99 | Plus |
| pio-RD | 3128 | CG3541-RD | 842..1907 | 8..1063 | 5075 | 99 | Plus |
| pio-RB | 2656 | CG3541-RB | 370..1435 | 8..1063 | 5075 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24595857..24596339 | 398..880 | 2400 | 99.8 | Plus |
| 2R | 25286936 | 2R | 24591952..24592174 | 109..331 | 1115 | 100 | Plus |
| 2R | 25286936 | 2R | 24596395..24596542 | 880..1024 | 590 | 98 | Plus |
| 2R | 25286936 | 2R | 24592230..24592300 | 329..399 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 24588754..24588805 | 8..59 | 260 | 100 | Plus |
| 2R | 25286936 | 2R | 24589377..24589425 | 60..108 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:18 has no hits.
UFO04958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:48 Download gff for
UFO04958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pio-RB | 333..1408 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:17 Download gff for
UFO04958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pio-RB | 360..1435 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:21 Download gff for
UFO04958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pio-RB | 360..1435 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:21 Download gff for
UFO04958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24588744..24588805 | 1..59 | 95 | -> | Plus |
| 2R | 24589377..24589425 | 60..108 | 100 | -> | Plus |
| 2R | 24591952..24592174 | 109..331 | 100 | -> | Plus |
| 2R | 24592233..24592299 | 332..398 | 100 | -> | Plus |
| 2R | 24595858..24596339 | 399..880 | 99 | -> | Plus |
| 2R | 24596396..24596531 | 881..1014 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:17 Download gff for
UFO04958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20483919..20484054 | 881..1014 | 98 | == | Plus |
| arm_2R | 20476267..20476328 | 1..59 | 95 | -> | Plus |
| arm_2R | 20476900..20476948 | 60..108 | 100 | -> | Plus |
| arm_2R | 20479475..20479697 | 109..331 | 100 | -> | Plus |
| arm_2R | 20479756..20479822 | 332..398 | 100 | -> | Plus |
| arm_2R | 20483381..20483862 | 399..880 | 99 | -> | Plus |
