UFO04959.5prime Sequence
1078 bp (971 high quality bases) assembled on 2009-06-30
> UFO04959.5prime
CAGTCGACATGTCCAACACGGAGAAAGGAGGTCTGCAAAGAGTGCGAAAC
TTTCTGTCATGCCGCCAAGTTCTGAACCTGCTGACCATGCTCGGCTTCAT
GCTGAACTACGCCCTGCGAGTGAACCTCACCATTGCCATCGTGGACATGG
TCCGACCCAATGTCACATCAGCGGTGAATGCCACTCTAGTGGGGAATAGT
ACGGCGGCCAATAGCACCGCATCGCCTGATGGAGTGGATGTGTACGAGGA
GCGCTTTCCCTGGGACAGCTACCAGACCAACTTCGTGCTGGGCTGCTTCT
TCTGGGGCTACATCCTCACCGAACTGCCGGGCGGTCGTCTTGCCGAGCTG
ATCGGTGGACGCCGCGTCTTTGGACATTCCATGCTGTGGGCCAGTCTGCT
CACCCTGATCACGCCGCTGGCGGCGCATATCAACTACGTGGTGCTCATCG
TGGTGCGAGTTGTTCTTGGCTTCATGCTGGGCGCATCCTGGCCAGCCATT
CACCCGGTGGCCGCTGTCTGGATTCCGCCCATGGAGCGCTCCAAGTTTAT
GTCCAACATGATGGCTTCTTCGCTTGGTGCTGCAATCACCATGCCCATCT
GCGGCTACCTGATCTCCGTCGCTGGCTGGGCCAGTGTTTTCTATTTGACG
GGAGCCGTGGGTCTGCTGTGGTCCTTGGCCTGGTTCACTTTTGTCTATGA
GACACCCGCCACTCATCCCAGGATTTCAGCCGAGGAGCGGCGGGAGATTG
AGGAGGCCATTGGCACCACTACCTCTAAGAAGCGTCCGAGCCATGTGCCC
TGGGGTCAGCTGCTCTGCTCTCCAGCTGTGTGAGCAATCATCATCTGTCA
CGGACTGGACCGTCTTTGGATTCTTCACTGTGGTCCATCAGTTGCCCACT
TTCATGTCCAAGATTCTGCACTTCGATATCAAAGAATGGGTTCGTTCTCG
TCCCTGCCTTTATCTGGGTAAATACGATAGGGCTGGGGCTTCCATCTAGC
TGGGATGATAACTGGCGCAGATGGTACCTTTGAGCACCAAGGCACAGGAC
TATTCACCTACTTTCGTCTTGTGAATCC
UFO04959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3036-RB | 2300 | CG3036-RB | 513..1586 | 8..1078 | 4745 | 96.9 | Plus |
| CG3036-RA | 2731 | CG3036-RA | 513..1586 | 8..1078 | 4745 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4901402..4901917 | 49..564 | 2580 | 100 | Plus |
| 2L | 23513712 | 2L | 4902024..4902392 | 564..933 | 1770 | 99.2 | Plus |
| 2L | 23513712 | 2L | 4893954..4893994 | 8..48 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:09 has no hits.
UFO04959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:56 Download gff for
UFO04959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3036-RA | 503..1496 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:05 Download gff for
UFO04959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3036-RA | 506..1499 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:50 Download gff for
UFO04959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3036-RA | 506..1499 | 1..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:50 Download gff for
UFO04959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4902025..4902395 | 565..934 | 98 | -> | Plus |
| 2L | 4893947..4893994 | 1..48 | 93 | -> | Plus |
| 2L | 4901402..4901917 | 49..564 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:05 Download gff for
UFO04959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4893947..4893994 | 1..48 | 93 | -> | Plus |
| arm_2L | 4901402..4901917 | 49..564 | 100 | -> | Plus |
| arm_2L | 4902025..4902395 | 565..934 | 98 | -> | Plus |
