UFO04961.5prime Sequence
1092 bp (998 high quality bases) assembled on 2009-06-30
> UFO04961.5prime
CAGTCGACATGGCCAATCGCTCCAGCCAGCGGGACCGAGAGTTCAATCGT
GATAATACTTACAATAACAATCGCGACAATCGAGACCATAATCGGGACAA
TCGCGATAATCGGGAGAATCGCAGTAATTTCCAAAACTATCGCAATCGTG
ACAGGGATCGCGATAGGCAGCGTCAGGTGCCCACGGAACCTCCGTTCATC
GCTTATGTGGGCAACCTTCCCAAGGGTCTCGTCCAGGGCGATGTGATGAA
GATATTTTCGGACTTCGAGGTGAAGAATGTGCGCCTGATCAAGGACCGTG
AGACGGATGAATTCAAAGGCTATGGCTACGTAGAGTTCGAGACTCTGGCA
CAACTGAAGAGTGCTCTCAACTGCAACGGACGCATCAAGCTAGACAACTT
TTCGGCCCCCCTGCGTATCGATATAGCCGACCATCGCCGGCAGAACCCGG
GTGCTCCCAGCGGTGTTGGCGGAGCTCCTCCAGCCGGAGTGGGCCACGAA
AGAGGTGGTGGCGTCGGAAGAGGAGGCAGCACGGGTGCAGCAAACGGTAA
CAATCCCTACTACCAGAGGCGCAACTATCGGCGGGACGACAGTGTGGGAT
CCCATCAGTTTAGAAGGAGGGAACCGCGCAGCAACAGCAGCAACCACCAA
ATGTCCAATAGCAGCCCCACACAAAGCACCACGTCCATTAATTACAACCG
CACCACTCGAGGTGGTTTCAATAGCCGTGTTGCTGTAGGTGGAAATGGCA
ATCGTTACCAAAGGAGGAGCTCCACGTAACTTCAATGACCGCGAGGATCA
GCAATCGACCGGCAGCGGAGGATTCCAACGCAATCGCACCTACAACTTTA
ACCGATCCATGAACAACAGCGTCGGCGGAGAGTGCTGGAGTAGGTAGGGG
CGGGCATCCGCAGCGGAACTTCATGGAAATGGAGGCGGCGTGGATTCGGG
TCGTAAATGAGGCGCACTATACATTTGTGCAGATCGCATCGCGATCGCGT
GACACTACATCAAATCACTCTGAGTTCTGCGCTACATAACATGGGAACAC
ACCTTGGCGGGAAACATCTTCTGGCAGGACATTCGATCGATA
UFO04961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1340-RC | 1843 | CG1340-RC | 223..1300 | 8..1061 | 4765 | 97.6 | Plus |
| CG1340-RA | 1851 | CG1340-RA | 223..1300 | 8..1061 | 4765 | 97.6 | Plus |
| Rbp2-RC | 2640 | CG4429-RC | 97..353 | 174..430 | 355 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30726309..30727154 | 8..854 | 4185 | 99.9 | Plus |
| X | 23542271 | X | 16449905..16450079 | 174..348 | 350 | 80 | Plus |
| 3R | 32079331 | 3R | 30727214..30727314 | 854..950 | 325 | 95 | Plus |
Blast to na_te.dros performed 2014-11-28 23:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6882 | 622..705 | 123 | 64.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3370 | 620..697 | 118 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1155 | 612..676 | 114 | 69.7 | Plus |
UFO04961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:05 Download gff for
UFO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 218..1199 | 1..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:08 Download gff for
UFO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 218..1199 | 1..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:35 Download gff for
UFO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1340-RA | 218..1199 | 1..976 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:35 Download gff for
UFO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30726304..30727154 | 1..854 | 99 | -> | Plus |
| 3R | 30727215..30727340 | 855..972 | 93 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:08 Download gff for
UFO04961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26552026..26552876 | 1..854 | 99 | -> | Plus |
| arm_3R | 26552937..26553062 | 855..972 | 93 | <- | Plus |
