UFO04962.5prime Sequence
1134 bp (1022 high quality bases) assembled on 2009-06-30
> UFO04962.5prime
CAGTCGACATGGTTATGATGCCCCTCCGGATACTGCTGATCGCCTTTTCG
CTGACGCTAGCCCAGAGCTATGGCGTCGGTGTCAATGGACCGCGTCCCGT
GCGCACTGTAGAAACGCTGACGCAGTGGGGCCAGCTGGAGTTCGGATTTC
CCACGGCGCAGGATCGGGAGAACGCTCAGGCGGCGGGTAATCTGGTGCCC
GAGAACGGCACTCCCATCGATGTGCAGCCACAGTACATGGCCAATGGCCA
GATCAGGCTGTTCACCACTATTCCGCGCTTCGTGACGGGCATTCCCTACA
CCTTGGCCACCGTTTCAGCGACGCAGGGCAGGAATGGCCCGCTGCTGCAG
CCGTATCCCAACTACTCCTGGCACAATGCCAACGGCGAGGACTGCGATCG
CATAACATCCGCATTCAGAGTGGCTATCACCGAGTGCAACCAGATGTGGG
TGATCGATTCGGGTGTGATTGGAACCACCCAGCTGTGTCCGCCGCAGTTG
CTGCAGTTCGCCCTGGCCACCGATCGCTTGCTGCATCGCTTCCGCTTCCC
GAACGACACATACATCCCGAGTGGATCGCTCTTCATCACGCCAAATGTAC
TCGTCCAGGATCCTCCGCCTAGGGGAACCTGCAGTCGCACCATGATCTAT
GTGGCCGATGTGAGCTATCATGGGCCTTGGTGGTCTACGACCACCAGGCG
CAGACATCATGGCGGGCTGAGAACCGCTTTATGTATCCCGATCCGGACTA
CGGCAAGCACACCATAGCAGGCGAGAGCTTCTACCTGATGGACGGCATGT
TTGCACTGAACAACGACAAGCGCAATCTTTACTTCCATCCGCTGGCCAGT
GCAAGTGAGTATTCCGTGCCACTGAGTGCTTTGAACCGGCAGCAGACTGG
GCCAACGGGCCGGAGCTCTGCCGGAGAGTTCAGCTGCTAGGCAGCGGCGA
GCCGAGTGCGTCCGCGTCCGCCATCGATGGCAGGAACACGTCTACTGCGT
CACTTCAATCCGGTCAGCTCTTTTGTGGGGACGTGAACTCGCCGTACAAT
CTGGAAACTTGTGCATCTTGCAGCAAGTTCGATGACCTGCAGTTTGTTCA
CGGCATGAGGGTTGGCGAACCGAAAGTCAGAGAA
UFO04962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-d-RA | 1751 | CG9889-RA | 294..1405 | 9..1112 | 4935 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23379337..23379966 | 426..1050 | 2515 | 96.8 | Plus |
| 2R | 25286936 | 2R | 23378866..23379282 | 9..425 | 2085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:50 has no hits.
UFO04962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:06 Download gff for
UFO04962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 327..1445 | 1..1112 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:20 Download gff for
UFO04962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 287..1405 | 1..1112 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:25 Download gff for
UFO04962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 287..1405 | 1..1112 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:25 Download gff for
UFO04962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23378859..23379282 | 1..425 | 99 | -> | Plus |
| 2R | 23379337..23380031 | 426..1112 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:20 Download gff for
UFO04962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19266382..19266805 | 1..425 | 99 | -> | Plus |
| arm_2R | 19266860..19267554 | 426..1112 | 95 | | Plus |
