UFO04963.5prime Sequence
1127 bp (991 high quality bases) assembled on 2009-06-30
> UFO04963.5prime
CAGTCGACATGGCTCACACACACCTGGGACGCGCCGTGAAAAACATTGAG
GCGCCACGCCCGTTGAAGACACAATCGCGATCGTCGTTGAAGAACAGCTA
CCTGGTGATCGAGGAGCTAATCCAGTTGATAGACAACGTGACCGTCGGTC
TTCAGTCGTGCAACACCACGCCGGAATCGATCACGCTGCTCCTGCACAAC
CTCCGGGTGCATGGACCGCAACTGGAGGCGGTGTCCAAGGATACACTGGA
CCGGGCCTTCGTCGTTTTCCGCAACGCTTCGCAGGACGAACGGCTGAATA
TAACGACGCGCCTCAAGCTGCTCGAACTCATCGAGCTGCGCGCCAAGAGC
TGGGACAATGACGACACAATCGCGTACTACAAGTCCAAGCAGCAGATCTC
CAACGTGGAGCTGCCTTCGGAATACCAGTACGATGCCGGCGTGCAGCCTG
GCGCCTTCAGCACCTCCCCCACATTCGGCGTCAGCGGCGGTGTTGGTGGC
GTTAACGATGGAGCCGCAGCCGCCGCTGCCGCCGTCTTCAATGCAGCATC
TGCAGCTGCAGCCGCCCAAGCTGCGGCCATTGCGGCCGTGGGCACATCCA
ACCAGCAGCACATGCTGCTGCCGCCCGGTGAGGTCATTCGTAATTCGGGC
AAGTTCCCCAAACCGACCAAGATTCCTGGCAAGACGTACTGCAAGGACGA
GGTCGTGATTCGCAATGCTGACTCCGGCAAAGTAATGGGCATCAAGGGGC
GTCGCGTGCACATGATCGAGGAGCTAAGCGAAACCATTATATCGTTTCAA
GAGTCAACCCGGGTGCCAAGGAGCGTTTGGTGCAGATTACTGGGTCCAGC
TGAGGATAAGATTAACTATGCCAAACACTTATGGAGGACACCATTCGTCG
GACGCCTCGCCGGTGCGCCTGGACCCGCTTCTGCCGTGGAGATCCTGCTC
CTCCCCTACTCGTCTACTCGGACGACGCATGGGGGACCAAAACGCCAACG
GAACAGTTTTGCCAACCGGCTAACTCTAACTCGCCGAACTTCATGACGCC
CAGCTGCTGCAAGGCAATTCTCGACAATGACCTACAACCTTACTGCATCA
AACAGCAACACGTCTGCCTCGATAATC
UFO04963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mxt-RD | 3034 | CG2950-RD | 231..1301 | 9..1061 | 4705 | 97.1 | Plus |
| mxt-RG | 2878 | CG2950-RG | 231..1301 | 9..1061 | 4705 | 97.1 | Plus |
| mxt-RE | 2351 | CG2950-RE | 246..1316 | 9..1061 | 4705 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4845642..4846043 | 410..9 | 2010 | 100 | Minus |
| 2L | 23513712 | 2L | 4845254..4845577 | 732..409 | 1620 | 100 | Minus |
| 2L | 23513712 | 2L | 4845091..4845162 | 800..729 | 360 | 100 | Minus |
| 2L | 23513712 | 2L | 4844712..4844781 | 865..795 | 260 | 94.4 | Minus |
| 2L | 23513712 | 2L | 4844572..4844646 | 937..866 | 210 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:38 has no hits.
UFO04963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:29 Download gff for
UFO04963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RC | 217..1266 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:12 Download gff for
UFO04963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2950-RE | 240..1289 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:33 Download gff for
UFO04963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mxt-RE | 240..1289 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:33 Download gff for
UFO04963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4844712..4844772 | 804..865 | 96 | <- | Minus |
| 2L | 4845087..4845158 | 733..803 | 98 | <- | Minus |
| 2L | 4845254..4845575 | 411..732 | 100 | <- | Minus |
| 2L | 4845642..4846048 | 1..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:12 Download gff for
UFO04963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4844712..4844772 | 804..865 | 96 | <- | Minus |
| arm_2L | 4845087..4845158 | 733..803 | 98 | <- | Minus |
| arm_2L | 4845254..4845575 | 411..732 | 100 | <- | Minus |
| arm_2L | 4845642..4846048 | 1..410 | 99 | | Minus |
