UFO04964.5prime Sequence
1161 bp (1050 high quality bases) assembled on 2009-06-30
> UFO04964.5prime
CAGTCGACATGGCTCATCCTCTGGCCAGACGGCCCATAAACGTTGAGCAA
CTGTCGGTACAACAGCTAGAAAACCGGGTGCGGGATCTAACGCAGCGTCT
GCAGCAGGCGGAAAGACAGCTCACTGAGAGCAACACAGAGCGGGAAATAT
GCCACAAGCGCTTGGAGGTTGTCAGCCAGGCCCACGAGTGTCGCATCACA
GAGATGCACTGTGTCATCGCCGAGTTAAGCAAGAAATTGCGCAGTAAGCA
GGACCACGTTATCATGGAGGAGCAGGAGCCCGACGGCAGCGAACTCAGCT
TTCAGGAGGGTTCAGTGTACAATTCCGAGCTTAACCTCACCAATCCTGAT
GCCGAATGTCAAACAGAACCACTGGAAGACTTCGAGGGCGCCTGCAGTAC
CACCAGCGTGGGTAACGTTGCCCACAAACCGCCGGAACTGAGCCATAAGG
GACAAGTGGAGGCACTGCAGGAGGAAGTTCTGCACTTGAGAGCTCGAATC
GCCCTCCTCCAGTCCGAGATTTCCACCAAGGATGCTGCTGTGGTCGAGGA
ACAGACCAAAGTCGCCTTCGACTGCGAATCGGAAGTCAACGAGTGCGGAC
AGCGACTGAATGATTTGAATGTTTGCACTTCCTTGACAAGTCCGCAAAAA
CGCATTCCAGCGGTACCGAAAATGGCTGAACGGGTTAAGTTGCGGTGCGC
CAGCAAACATGAATCCGGAGAAGATCCATCCCAAGATACTTCATTGAGCA
ACGAGCAAATTAATCTGGTCGAACATTTGGTGTCGGAGCTAAAGGAGCAA
AATCTATATATGGAGAACTTTATGGAGCCCCTACATTTGAGCAAAGACTT
GGAGCGACTGCAACGACGTGTTGAACAATTGGAGATGCGAAACACCATGC
TGGCACTGACGCTAGACGAATGCAAGGAGCACACTGAGCATCTGTATCTG
CTATGCGGAAAGTACGAGTCCATGCGTTGCTCTTCAGTTGGCGCCTTAAT
TGCAGTGATCGCGCATCGAAGCTACGACGTATGTTGCTCTGCTCGAAAGC
AGTTGGCACTGGCTGGGGGGAAAAATCATGCAGCGGAAGAAGTCGACAAT
CCGTGGAGGCGGTGCAGCACTGCTAGTGTTTGATGGAAAACGTTGGAACA
GCCTGCACCTG
UFO04964.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34404-RD | 2635 | CG34404-RD | 85..1197 | 9..1114 | 5195 | 98.5 | Plus |
| CG34404-RE | 2702 | CG34404-RE | 185..1264 | 42..1114 | 5030 | 98.4 | Plus |
| CG34404-RC | 2890 | CG34404-RC | 520..1599 | 42..1114 | 5030 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15365960..15366290 | 621..291 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 15366347..15366596 | 291..42 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 15365449..15365710 | 1014..754 | 1165 | 98.9 | Minus |
| 3R | 32079331 | 3R | 15365771..15365905 | 755..621 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:10 has no hits.
UFO04964.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:30 Download gff for
UFO04964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1213 | 9..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:55 Download gff for
UFO04964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1213 | 9..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:40 Download gff for
UFO04964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34404-RD | 85..1213 | 9..1126 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:40 Download gff for
UFO04964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15365408..15365708 | 756..1051 | 97 | <- | Minus |
| 3R | 15365771..15365904 | 622..755 | 100 | <- | Minus |
| 3R | 15365960..15366289 | 292..621 | 100 | <- | Minus |
| 3R | 15366347..15366596 | 42..291 | 100 | <- | Minus |
| 3R | 15366664..15366696 | 9..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:55 Download gff for
UFO04964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11191130..11191430 | 756..1051 | 97 | <- | Minus |
| arm_3R | 11191493..11191626 | 622..755 | 100 | <- | Minus |
| arm_3R | 11191682..11192011 | 292..621 | 100 | <- | Minus |
| arm_3R | 11192069..11192318 | 42..291 | 100 | <- | Minus |
| arm_3R | 11192386..11192418 | 9..41 | 100 | | Minus |
