UFO04965.5prime Sequence
1156 bp (1001 high quality bases) assembled on 2009-06-30
> UFO04965.5prime
CAGTCGACATGGCCTTAATTATGAAATACATCGACAGCATAAGCAGATAC
ATGGACTCACATAGTGACTCGAGGACAAAGGGCTGGCCCATGATGTCGTC
CCCATTCCCCACACTGGCCGTTTGCCTCACATATGTCTATCTGGTCAAGG
TGCTGGGACCCCGATTAATGGAGAACCGAAAGCCTCTGAATCTGCAAAAC
ACTCTAGTCATGTACAATGCCATACAGGTTGTATTTAGCGCATGGCTGTT
TTATGAGATAGGCATTTCCGGTTGGCTAACTGGACATTATAGCTTCCGAT
GTCAGCCAGTCGACTATAGTAATAATCCTAGAACGTTAAGGATGGTTCAT
GCCTGCTGGTGGTACTACTTCTCGAAGTTTACAGAATTCATGGATACGAT
TTTCTTCGTGTTGCGCAAGAAGTCGAGCCAAGTTACCACACTGCACGTCA
TCCATCACGGCTGCATGCCCATGTCGGTCTGGTTCGGCGTCAAGTTCACA
CCGGGTGGTCACAGCACCTTCTTCGGCCTGCTCAACACCTTCGTCCACAT
CGTGATGTACACCTACTACATGTTCTCCGCCATGGGTCCGCAGTACCAGA
AATACCTCTGGTGGAAGAAGTACCTGACCACTCTGCAGATGGTCCAGTTC
ATCTTGATCATGGTGCACGCCTTCCAGCTGCTCTTCATCGATTGCAACTA
CCCGAAGGCGTTCGTCTGGTGGATTGGCATGCATGCCCGTCATGTTCTTC
TTCCTGTTCAACGAGTTCTACAAGGCAGCCTACAGGAGCCGCATGATGAA
AAAGAACGGAGCCCTGGCCAACGGACACGCCAAGCCCATGGCTACTGCAA
GAGCATCAACGCCCATGACGATCTGGCCATGCCACAGACCACGGAGGCGA
CAGCGACAGCGACGCCCGCATCCAAGCCAACGGGAGCAGCACCCCGCGAG
CAATGACATGCATGGGGTGAGAACGTCTACAAGCAGTGCCACGGCAGCGC
GCACAGGGTCCAACGGAGGACTGACAACGGTATGCCACCAGCTGCTGACG
ACGCCTTCTAGGAGCTGACAGCGAAAGACCCGAAGGCAAGCTTTCTAGAC
ATCGGTGGGCCGCCGGGTCAGAAGGTCCTATCTATACTATACTAACTCAT
ATCACA
UFO04965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31522-RF | 2883 | CG31522-RF | 454..1547 | 9..1084 | 4960 | 97.9 | Plus |
| CG31522-RB | 2216 | CG31522-RB | 322..1415 | 9..1084 | 4960 | 97.9 | Plus |
| CG31522-RD | 2760 | CG31522-RD | 331..1424 | 9..1084 | 4960 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4443902..4444058 | 798..641 | 740 | 99.4 | Minus |
| 3R | 32079331 | 3R | 4444110..4444249 | 643..504 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 4442770..4443056 | 1068..798 | 700 | 92.7 | Minus |
| 3R | 32079331 | 3R | 7982801..7983135 | 687..353 | 625 | 79.1 | Minus |
| 3R | 32079331 | 3R | 4446412..4446534 | 270..148 | 570 | 97.6 | Minus |
| 3R | 32079331 | 3R | 4444319..4444428 | 507..398 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 4446737..4446823 | 152..66 | 435 | 100 | Minus |
| 3R | 32079331 | 3R | 4445332..4445417 | 341..256 | 430 | 100 | Minus |
| 3R | 32079331 | 3R | 4467642..4467766 | 631..507 | 325 | 84 | Minus |
| 3R | 32079331 | 3R | 4444506..4444563 | 398..341 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 4447701..4447758 | 66..9 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 22555685..22555806 | 542..663 | 235 | 79.5 | Plus |
| 3R | 32079331 | 3R | 22559608..22559737 | 643..514 | 230 | 78.5 | Minus |
| 3R | 32079331 | 3R | 22532970..22533076 | 640..534 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:49 has no hits.
UFO04965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:32 Download gff for
UFO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RB | 313..1407 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:59 Download gff for
UFO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RD | 324..1418 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:22 Download gff for
UFO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RD | 324..1418 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:22 Download gff for
UFO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4442751..4443055 | 799..1084 | 92 | <- | Minus |
| 3R | 4443902..4444057 | 642..798 | 99 | <- | Minus |
| 3R | 4444112..4444248 | 505..641 | 100 | <- | Minus |
| 3R | 4444322..4444427 | 399..504 | 100 | <- | Minus |
| 3R | 4444506..4444562 | 342..398 | 100 | <- | Minus |
| 3R | 4445332..4445415 | 258..341 | 100 | <- | Minus |
| 3R | 4446425..4446532 | 150..257 | 100 | <- | Minus |
| 3R | 4446740..4446822 | 67..149 | 100 | <- | Minus |
| 3R | 4447701..4447762 | 1..66 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:59 Download gff for
UFO04965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 271054..271137 | 258..341 | 100 | <- | Minus |
| arm_3R | 270228..270284 | 342..398 | 100 | <- | Minus |
| arm_3R | 272147..272254 | 150..257 | 100 | <- | Minus |
| arm_3R | 272462..272544 | 67..149 | 100 | <- | Minus |
| arm_3R | 273423..273484 | 1..66 | 93 | | Minus |
| arm_3R | 269624..269779 | 642..798 | 99 | <- | Minus |
| arm_3R | 268473..268777 | 799..1084 | 92 | <- | Minus |
| arm_3R | 269834..269970 | 505..641 | 100 | <- | Minus |
| arm_3R | 270044..270149 | 399..504 | 100 | <- | Minus |
