UFO04966.5prime Sequence
1145 bp (1021 high quality bases) assembled on 2009-06-30
> UFO04966.5prime
CAGTCGACATGAAATACATCCTGGTAACTGGTGGCGTCATTAGTGGCGTG
GGAAAAGGAGTGATTGCCTCCTCGTTCGGAACGCTTTTGAAATCCTGTGG
TCTGGATGTAACCTCGATCAAGATTGACCCCTATATCAATATAGATGCTG
GAACCTTTTCGCCTTATGAGCATGGCGAGGTTTACGTTTTGGACGATGGC
GCCGAGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTAC
CCTGCATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTGGTCA
TTGAGAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTC
CCACACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGAC
ACCCGTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAG
GAACGATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAG
TTTCAGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCT
GGTTCCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAA
GTTCGGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTC
TGCCGATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAA
CTTTTGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTGAACT
CCATTTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATAC
CTAAATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACCAAATG
CTTGCAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCGTTCGCCGTG
AAGTTTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGGATTCGTAC
GCCTCCGTAGTTAAAGCCCTGCACATGCCGCCCTGGCAGTGAATCGCAAC
TGGAACTGGTCTTTTTTCGAGTCCTGCCTGCTGGAGGAGAAACTTTGCAT
TCTGGAGCCGAACAGTACCACAGGAGTGCGGAGCTATGGCGATAGCCATG
CATCTAGTCCCGTGATTCGGTTTCCGTGAATGAAGCCAGATCTGC
UFO04966.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTPsyn-RC | 2627 | CG45070-RC | 438..1566 | 9..1128 | 5220 | 98.2 | Plus |
| CTPsyn-RA | 2406 | CG45070-RA | 217..1345 | 9..1128 | 5220 | 98.2 | Plus |
| CTPsyn-RB | 2423 | CG45070-RB | 400..1362 | 175..1128 | 4390 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15111085..15111588 | 344..847 | 2520 | 100 | Plus |
| 3L | 28110227 | 3L | 15110815..15110986 | 174..345 | 860 | 100 | Plus |
| 3L | 28110227 | 3L | 15098351..15098525 | 9..183 | 845 | 98.9 | Plus |
| 3L | 28110227 | 3L | 15111653..15111861 | 848..1054 | 820 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:04 has no hits.
UFO04966.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:07 Download gff for
UFO04966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6854-RC | 212..1337 | 2..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:49 Download gff for
UFO04966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTPsyn-RC | 214..1339 | 2..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:03 Download gff for
UFO04966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTPsyn-RA | 214..1339 | 2..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:03 Download gff for
UFO04966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15098348..15098516 | 2..174 | 97 | -> | Plus |
| 3L | 15110816..15110986 | 175..345 | 100 | -> | Plus |
| 3L | 15111087..15111588 | 346..847 | 100 | -> | Plus |
| 3L | 15111653..15111936 | 848..1122 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:49 Download gff for
UFO04966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15103916..15104086 | 175..345 | 100 | -> | Plus |
| arm_3L | 15091448..15091616 | 2..174 | 97 | -> | Plus |
| arm_3L | 15104187..15104688 | 346..847 | 100 | -> | Plus |
| arm_3L | 15104753..15105036 | 848..1122 | 93 | | Plus |
