UFO04968.5prime Sequence
1126 bp (1021 high quality bases) assembled on 2009-06-30
> UFO04968.5prime
CAGTCGACATGGCAGAGACCAATAAAGTCCGTCTCCTCAGGGGTTATCTC
TACGCCGGGGAGCTGCGTCAATTAACGGCGGGCGGTAGTAAGACCGCGTG
CCAGGAGCTATCACTTGAGCCCTTCTGGCAGCCGCAGCCACTGCTGAGCA
AGTTAACCGATGGGGGATCCTTCGAGCTGCAGGAGCAATTCGCCATCATC
AATGATGAGCGCTTCCTGCAGAGCGTCGAGCGGCAGCAGCTGGTCATGGA
GCTGCGTCCATTGGGAGGAGTCGTACGACTTCCGCTGCACCAGTTCTTCA
TCGCCTACAGAGACTCCAGCATCACAAATCACCTGTGCAAGGGAAAGCTA
CCAGTGATCTCCATCGATGGCTGGGCACCAATTGTCAGTGCTGAGAACAA
GACGCCTCTGGGCGAGCTCAAGGTGCTTCTGGCCATTGGAAGTGAGTCGC
AGATTGCTCAACTGAAGCAGCTGCGTGGCTTCGACCATGACAACAACCAA
GTACCGGCTCCAAGCCGGACCACAGACTTACTCGACATGCTTCAAAATGC
CATCGCAGCTCCGACGCCGAATATCGCAGGTCCAGTAATGCCGCCGCCAC
CGGCTCCTCCAGCGCCCAGTACCTTTAGCTTCCAGTTGCGCATCGTGGGA
GCTGCTGGACTGCCCCTAAATCCCGGCTATGGGAAATCGAAGAAGCAAGT
AAAACGTCAGTCGGCAGCCAAGCGCTTCCCGCCCAACGAACCTCCCAACA
CCTATGTGACCTTCCAGGCCATCAGTTGCAATAGTCAGACCTATAAGTCG
CACGAAAGGATTGGTGTACGCCACACCAATTGTACCCAAATCGACGAAGC
CCCAGTGGCTTAGCAAGTTCCGCGTGACGTGAGTCGCGATTATCGCAGCA
ATCCCCAGAAGCTTTTCATTCTGAAGCTTTGGAAAAAGCGGTTGTTAGCC
CAAATGGCATCACAGAGCCGTCTTCCCATGAGATGCCATATAGATTCGCT
GCACCTTAATCTTAACCAAAAAACAGCGGGCGAGCTTTCCCAGCGGATGC
ATAAATAGTTAGACTCATGGACGTGTGACTGGGGATCGAGGCGCACGTGA
GCCATTCGCCCAGGTAGATATCGTAT
UFO04968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32425-RA | 2813 | CG32425-RA | 949..2080 | 8..1125 | 5125 | 97.9 | Plus |
| CG32425-RE | 2827 | CG32425-RE | 963..2094 | 8..1125 | 5125 | 97.9 | Plus |
| CG32425-RC | 2077 | CG32425-RC | 213..1344 | 8..1125 | 5125 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20512519..20513075 | 346..902 | 2690 | 99.6 | Plus |
| 3L | 28110227 | 3L | 20512046..20512385 | 8..347 | 1700 | 100 | Plus |
| 3L | 28110227 | 3L | 20513138..20513344 | 903..1099 | 400 | 88.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:10 has no hits.
UFO04968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:09 Download gff for
UFO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RA | 943..2080 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:54 Download gff for
UFO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RC | 207..1344 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:08 Download gff for
UFO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32425-RC | 207..1344 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:08 Download gff for
UFO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20512040..20512385 | 1..347 | 98 | -> | Plus |
| 3L | 20512521..20513075 | 348..902 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:54 Download gff for
UFO04968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20505140..20505485 | 1..347 | 98 | -> | Plus |
| arm_3L | 20505621..20506175 | 348..902 | 99 | -> | Plus |
