UFO04969.5prime Sequence
1113 bp (1023 high quality bases) assembled on 2009-06-30
> UFO04969.5prime
CAGTCGACATGGTTATTGTGCACGAGCGGGTTCCGGATATGAAGCGCTAT
CCGCCGCTGCCGGACATCTTCCTGGACAACGTGCCGCATATTCCGTGGGC
CTTTAATATGTGCGAAATAACCGGCTCACTATTGTTCACCATTTGGGTGG
TCGTGCTAACCTTCCACAAGTATAGATTGGTCCTACTGAGGCGATTCTTT
GCTCTGGCGGGCACGGTTTTCCTGCTGCGCTGCGTCACCATGTTGATCAC
GTCGCTGAGCGTACCGGGAACGCATCTGCAGTGCAGCCAGAAGGACTTTG
CCATCGATGATCCCAATGTGGACATGGTGGGCGCCTTGATTATCCGCATG
TCACGAGCCTATCGCATCTGGAGCGGCCTGGGCATGTCCATTCAGGGAGT
GCGGACCTGCGGCGATTATATGTTTAGTGGTCACACGGTGGCCTTGACCC
TGCTCAACTTCTTTATCACAGAATACACGCCGCGGAATCTGTACTTCCTG
CACACGCTGACCTGGCTGCTCAACATGTTTGGCATATTCTTCATCCTGGC
TGCCCACGAGCACTACTCCATCGATGTGTTTGTGGCCTTCTATATCACCT
CACGTCTGTTTCTGTACTATCATACTCTAGCAAATAACAGGGCTCTCATG
CAAAGCGACTCCAAGAGGACGCGTGTTTGGTTTCCCATGTTTAGCTACTT
CGAGAGCAGTGTCGATGGAATGGTGCCCAATGAATACGATACACTTGGCT
CCCTCATCGATGGGATTATTGAGCAGATCTTCAAGGCCAAGGATCAATTG
GCCATATCCGTGAAGCGCTGCTGGCTGGATGCCCCGCTGTCCGGCAATTC
ATCGGCTCACATGTTTGGCGGAGAATCTGAACAATGTTTGCGCAATGGCA
CAGCATCGGCCGCTTTCTTTAGTCCTCACCAGTCGCTGATCGGAGGGATT
GGGTGGTCAGAGGAGCCAGAACGCATTTGAATAGCGCCCAATCCGGGTCC
TCCACACCCACACCAGCTACATCGCGCGAACAGAGTTGCCGACAAAGAAG
ACTCCAGGATGCGAGTTGATCCTTTCCGCACGACGTCCCTGCGTCACAGC
CAACGTCAGATTC
UFO04969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 893..1982 | 9..1086 | 5060 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7375405..7375870 | 474..9 | 2330 | 100 | Minus |
| 3L | 28110227 | 3L | 7374735..7375116 | 1024..641 | 1820 | 99.5 | Minus |
| 3L | 28110227 | 3L | 7375179..7375346 | 642..475 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:16 has no hits.
UFO04969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:10 Download gff for
UFO04969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RB | 163..1207 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:10 Download gff for
UFO04969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 885..1929 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:55 Download gff for
UFO04969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 885..1929 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:55 Download gff for
UFO04969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7375405..7375878 | 1..474 | 99 | | Minus |
| 3L | 7374694..7375115 | 642..1057 | 97 | <- | Minus |
| 3L | 7375180..7375346 | 475..641 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:10 Download gff for
UFO04969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7367794..7368215 | 642..1057 | 97 | <- | Minus |
| arm_3L | 7368280..7368446 | 475..641 | 100 | <- | Minus |
| arm_3L | 7368505..7368978 | 1..474 | 99 | | Minus |
