UFO04972.5prime Sequence
1102 bp (1008 high quality bases) assembled on 2009-06-30
> UFO04972.5prime
CAGTCGACATGTCGCATCAGTGCAGCTGCGGTCGCGACCTCAACAACAAC
TACGTCTCGTACACCAACGCCTACGCCAATGCGAATGCATCTCTGGACCG
CGAGGCGGCCACCAGCGGCAAGTCCGGCGGTCCGCCCCGCGCCCAGCTGA
CGGCCAAGGTGATGTTCGGTACGGTGGGCGCCATCAAGGAGCTGCGCGAC
AAGGAGCAGCAGCAACAGCAGCAGCGGCAGGCGGCACGAGCGGGCGAGAG
GCGCAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGC
GAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCA
CCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGG
AAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTG
TAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACG
TTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCAT
ATCACAGCTCACGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCA
TCAGGCGGGCAGATGTGATAAAGCGATAAACTGTGCTTATTTTTCTTTAC
GTCTTAAAAGCGTATATCCAGCTGACGTCTGTTATAGTACATGAGCCACT
GACTGAATGCCTCAAATGTTCCTACGATGCATGGATATCACGGTGCTAAT
CA
UFO04972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13631-RB | 1583 | CG13631-RB | 170..420 | 7..257 | 1255 | 100 | Plus |
| CG13631-RA | 761 | CG13631-RA | 170..420 | 7..257 | 1255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24769520..24769770 | 7..257 | 1255 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 826..893 | 123 | 68.1 | Plus |
UFO04972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:54 Download gff for
UFO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13631-RA | 160..418 | 1..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:11 Download gff for
UFO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13631-RA | 162..420 | 1..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:17 Download gff for
UFO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13631-RA | 162..420 | 1..257 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:17 Download gff for
UFO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24769512..24769770 | 1..257 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:11 Download gff for
UFO04972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20595234..20595492 | 1..257 | 98 | == | Plus |
