UFO04974.5prime Sequence
1167 bp (1061 high quality bases) assembled on 2009-06-30
> UFO04974.5prime
CAGTCGACATGCCTCACAAACGTAGGAACCGAGTACATGCGAACCAAAGG
AATTTCACAGCGCGACGCGTTTCTGTGGCCAAACTGTCGTCTGCACCGCC
GAATGTGCTCGTCGAATCCTGCAACGGTTCTCATGCGGATAACAGTTCGC
CGGACAGTCCGAAAGCCAAAGAAGGTGCAATGACCAACGGGAAAAACCCG
GAGATCAAGTTAGCCGTGCCCAAATGCAACACCACCGTGCGCAAGCAGAA
CGAGGCCCATATCATATCCAACATTAAGCTGGATATGAACCTTAATAAGG
ATTCTAACTTTATCGCCCCACAGATCACCAAAAAGATGAACTTCGCTCCG
AATCGTGTTGTATTCGGGGTCCTGGTGCCTCTCAATGTCAACGATTCTGT
GCTGGTGCCGCACAATAGAAAGCCGGATGCCTTAAAGCACACATCGAAAG
AATCGGAATCATGCAAGGCCATAAGCGAGCCCCAGCTAGCCGACTATGCG
GAGAAAGTAGATCCCATGATAATGGCTGTTAAGGAACCAGTACTCCACTT
GGATTGGGAACCAGGGCCCTTCGATTTTTTCGGCGCATATAGGAGAACAT
ACAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGACCTGATCGCCAGCGGCATCAGCA
CCTTGTCGCTTGCGTATATATTTGCCCATGGTGAAACGGGGGCGAGAGTG
TCCATATTGGCCACGTTTAAATCAAAACTGTGAACTCACCCAGGGATGGC
TGAAACGAAAAACTATTCTCAATACCCTTTAGGAAATAGCAGTTCACGTA
CACGCCAACTCTGCAATATGGTGAACTGCGAATTCGGCTTGATCCACTCA
AAGCGATGTAAACGTTT
UFO04974.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd4-RB | 681 | CG17295-RB | 44..639 | 9..604 | 2935 | 99.5 | Plus |
| Rcd4-RA | 733 | CG17295-RA | 96..691 | 9..604 | 2935 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8382956..8383270 | 9..323 | 1575 | 100 | Plus |
| 2L | 23513712 | 2L | 8383327..8383615 | 316..604 | 1385 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:21 has no hits.
UFO04974.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:35 Download gff for
UFO04974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17295-RA | 142..737 | 9..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:19 Download gff for
UFO04974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd4-RA | 96..691 | 9..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:23 Download gff for
UFO04974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd4-RA | 96..691 | 9..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:23 Download gff for
UFO04974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8383335..8383615 | 324..604 | 98 | == | Plus |
| 2L | 8382956..8383270 | 9..323 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:19 Download gff for
UFO04974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8382956..8383270 | 9..323 | 100 | -> | Plus |
| arm_2L | 8383335..8383615 | 324..604 | 98 | == | Plus |
