UFO04975.5prime Sequence
1128 bp (988 high quality bases) assembled on 2009-06-30
> UFO04975.5prime
CAGTCGACATGAGCAATGGTCCCCAGCTAACAGAGGAAGATCTTAAACGA
GACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTATGTGCTTGT
AGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTACAAGGCAT
ACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCTATGTCCGC
CCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTGGAGGTTGC
ATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAATGTACTGG
AATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCGTGGATTTG
ACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAACAACTGGC
CAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
AACATATTCTCATAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTACA
CGCACATCTGCGATAATGTGTAGAACTGCGGAAATCGTCGTGTATCACTC
AGAGCGATGAAACGTTTCAGTTTGCTCATGAACGGTGTAACAGGGTGAAC
CTATCAATCCAGCTCACCGTCTTTCATGCATACGAATCGATGACATCATC
AGCGGGCAATTGATAGCCGATACTATGG
UFO04975.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4210-RA | 682 | CG4210-RA | 156..581 | 9..434 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15214426..15214744 | 116..434 | 1595 | 100 | Plus |
| 3R | 32079331 | 3R | 15214288..15214365 | 38..115 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:38 has no hits.
UFO04975.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:36 Download gff for
UFO04975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4210-RB | 213..649 | 2..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:33 Download gff for
UFO04975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4210-RA | 151..587 | 2..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:49 Download gff for
UFO04975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4210-RA | 151..587 | 2..442 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:49 Download gff for
UFO04975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15214290..15214365 | 40..115 | 100 | -> | Plus |
| 3R | 15214426..15214744 | 116..434 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:33 Download gff for
UFO04975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11040012..11040087 | 40..115 | 100 | -> | Plus |
| arm_3R | 11040148..11040466 | 116..434 | 100 | == | Plus |
