UFO04980.5prime Sequence
1117 bp (1007 high quality bases) assembled on 2009-06-30
> UFO04980.5prime
CAGTCGACATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCAGCATCCTG
GTGCTTGTGGCCTTTTCGTTGGGTACGTATTTTGGGCTACGAAGAAGAAG
ACTGCCACGCCCCCTTTCGGGCAAGGGCCGTTATGTAATCGTAAAGGAAA
GAAATGCAAATGAAGGCCTAAAAACTCTGTTAACTCTGCTAACCGTTTCT
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGG
CCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAAC
TGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGT
TTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCA
GCTCACCGTCTTTCATTGCCATACGAATTCCGGATGAGCATTCATCAGCG
GCAGATGTGATAAGGCCGGATAAACTTGTGCTTATTTTTCTTTACGTCTT
TAAAAGCCGTATATCCAGCTGACGTCTGTATAAGGTACATGAGCACTGAC
TGAAATGCTCAAATGTTCTTTACGATGCCATGGATTATCAACGTGAAAAT
CCAGTGATTTTTCTCCATTTAGCTCTAGCTTCTGAGGATCTACTCGTTGC
TACTAAGCCAGTAGATC
UFO04980.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRbeta1-RB | 818 | CG11348-RB | 240..432 | 8..200 | 965 | 100 | Plus |
| nAChRbeta1-RA | 2460 | CG11348-RA | 240..304 | 8..72 | 325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4429651..4429843 | 8..200 | 965 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 769..836 | 123 | 68.1 | Plus |
UFO04980.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:12 Download gff for
UFO04980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-64B-RB | 211..403 | 8..200 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:48 Download gff for
UFO04980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-64B-RB | 240..432 | 8..200 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:41 Download gff for
UFO04980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAChRbeta1-RB | 240..432 | 8..200 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:41 Download gff for
UFO04980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4429651..4429843 | 8..200 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:48 Download gff for
UFO04980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4429651..4429843 | 8..200 | 100 | == | Plus |
