UFO04981.5prime Sequence
1065 bp (966 high quality bases) assembled on 2009-06-30
> UFO04981.5prime
CAGTCGACATGTCGTGGCGACGGTACGTGCGGCCAAACAAATTACAGGGA
AATTGCGTCACCTGCAGGAATTTCCACTCGACATTGTCAAATGCCATCAG
AAATCGCTGGACATGTTGTAACATTAATTTGACATTTTACGGCCCAGGAC
GGGGATCGTCGACGGGAATGAGACCGCAGAGCAACGCAGGACAACGTGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCA
GGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGC
CGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTG
CTCATGGAAAACGGTGTAACAAGGGTGACACTATCCCATATCACCAGCTC
ACCGTCTTTCATGCCATACGAATTCCGGATGAGCATTCATCAGCGGGCAG
ATGTGATAAAGCGATAAACTGTGCTTATTTTTCTTACGTCTTAAAGCGTA
TATCAGCTGACGTCTGTTATAGTAAATGAGCACTGACTGAATGCCTCAAT
GTTCTTACGATGCATGGAATTATCACGTGAATCAAGGATTTTTCCATAGC
TCTAGTCTGAAGAAT
UFO04981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31517-RB | 1185 | CG31517-RB | 415..604 | 8..197 | 950 | 100 | Plus |
| CG31517-RA | 827 | CG31517-RA | 415..604 | 8..197 | 950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13948834..13948998 | 8..172 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:56 has no hits.
UFO04981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:13 Download gff for
UFO04981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31517-RA | 392..592 | 1..201 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:24 Download gff for
UFO04981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31517-RA | 392..592 | 1..201 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:28 Download gff for
UFO04981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31517-RA | 407..607 | 1..201 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:28 Download gff for
UFO04981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13948826..13948998 | 1..172 | 97 | -> | Plus |
| 3R | 13949083..13949107 | 173..197 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:24 Download gff for
UFO04981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9774548..9774720 | 1..172 | 97 | -> | Plus |
| arm_3R | 9774805..9774829 | 173..197 | 100 | == | Plus |
